Onco‐multi‐OMICS approach: a new frontier in cancer research

S Chakraborty, MI Hosen, M Ahmed… - BioMed research …, 2018 - Wiley Online Library
The acquisition of cancer hallmarks requires molecular alterations at multiple levels
including genome, epigenome, transcriptome, proteome, and metabolome. In the past …

The DNA methylation landscape of advanced prostate cancer

SG Zhao, WS Chen, H Li, A Foye, M Zhang… - Nature …, 2020 - nature.com
Although DNA methylation is a key regulator of gene expression, the comprehensive
methylation landscape of metastatic cancer has never been defined. Through whole …

Artificial intelligence to decode cancer mechanism: beyond patient stratification for precision oncology

SK Patel, B George, V Rai - Frontiers in Pharmacology, 2020 - frontiersin.org
The multitude of multi-omics data generated cost-effectively using advanced high-
throughput technologies has imposed challenging domain for research in Artificial …

Molecular evolution of early-onset prostate cancer identifies molecular risk markers and clinical trajectories

C Gerhauser, F Favero, T Risch, R Simon, L Feuerbach… - Cancer cell, 2018 - cell.com
Identifying the earliest somatic changes in prostate cancer can give important insights into
tumor evolution and aids in stratifying high-from low-risk disease. We integrated whole …

Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer

M Arechederra, F Daian, A Yim, SK Bazai… - Nature …, 2018 - nature.com
Epigenetic modifications such as aberrant DNA methylation reshape the gene expression
repertoire in cancer. Here, we used a clinically relevant hepatocellular carcinoma (HCC) …

Increased serine and one-carbon pathway metabolism by PKCλ/ι deficiency promotes neuroendocrine prostate cancer

M Reina-Campos, JF Linares, A Duran, T Cordes… - Cancer Cell, 2019 - cell.com
Increasingly effective therapies targeting the androgen receptor have paradoxically
promoted the incidence of neuroendocrine prostate cancer (NEPC), the most lethal subtype …

Random forest-based modelling to detect biomarkers for prostate cancer progression

R Toth, H Schiffmann, C Hube-Magg, F Büscheck… - Clinical …, 2019 - Springer
Background The clinical course of prostate cancer (PCa) is highly variable, demanding an
individualized approach to therapy. Overtreatment of indolent PCa cases, which likely do not …

SPOP mutation induces DNA methylation via stabilizing GLP/G9a

J Zhang, K Gao, H Xie, D Wang, P Zhang, T Wei… - Nature …, 2021 - nature.com
Mutations in SPOP E3 ligase gene are reportedly associated with genome-wide DNA
hypermethylation in prostate cancer (PCa) although the underlying mechanisms remain …

Integration of gene expression and DNA methylation data across different experiments

Y Itai, N Rappoport, R Shamir - Nucleic Acids Research, 2023 - academic.oup.com
Integrative analysis of multi-omic datasets has proven to be extremely valuable in cancer
research and precision medicine. However, obtaining multimodal data from the same …

What do we have to know about PD-L1 expression in prostate cancer? A systematic literature review. Part 1: Focus on immunohistochemical results with discussion of …

A Palicelli, M Bonacini, S Croci, C Magi-Galluzzi… - Cells, 2021 - mdpi.com
Immunotherapy targeting the PD-1–PD-L1 axis yielded good results in treating different
immunologically ''hot''tumors. A phase II study revealed good therapeutic activity of …