[HTML][HTML] Live-cell imaging in the deep learning era

JW Pylvänäinen, E Gómez-de-Mariscal… - Current Opinion in Cell …, 2023 - Elsevier
Live imaging is a powerful tool, enabling scientists to observe living organisms in real time.
In particular, when combined with fluorescence microscopy, live imaging allows the …

Light-sheets and smart microscopy, an exciting future is dawning

S Daetwyler, RP Fiolka - Communications biology, 2023 - nature.com
Light-sheet fluorescence microscopy has transformed our ability to visualize and
quantitatively measure biological processes rapidly and over long time periods. In this …

Live-cell imaging powered by computation

H Shroff, I Testa, F Jug, S Manley - Nature Reviews Molecular Cell …, 2024 - nature.com
The proliferation of microscopy methods for live-cell imaging offers many new possibilities
for users but can also be challenging to navigate. The prevailing challenge in live-cell …

An optogenetic toolkit for light-inducible antibiotic resistance

MB Sheets, N Tague, MJ Dunlop - Nature Communications, 2023 - nature.com
Antibiotics are a key control mechanism for synthetic biology and microbiology. Resistance
genes are used to select desired cells and regulate bacterial populations, however their use …

Advances in automated and reactive flow cytometry for synthetic biotechnology

F Delvigne, JA Martinez - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights•The accessibility to automated flow cytometry equipment has recently been
increased through the open science initiative.•Automated and reactive flow cytometry can be …

Data-driven microscopy allows for automated context-specific acquisition of high-fidelity image data

O André, JK Ahnlide, N Norlin, V Swaminathan… - Cell reports …, 2023 - cell.com
Light microscopy is a powerful single-cell technique that allows for quantitative spatial
information at subcellular resolution. However, unlike flow cytometry and single-cell …

Platforms for optogenetic stimulation and feedback control

S Kumar, M Khammash - Frontiers in Bioengineering and …, 2022 - frontiersin.org
Harnessing the potential of optogenetics in biology requires methodologies from different
disciplines ranging from biology, to mechatronics engineering, to control engineering. Light …

Deep model predictive control of gene expression in thousands of single cells

JB Lugagne, CM Blassick, MJ Dunlop - Nature Communications, 2024 - nature.com
Gene expression is inherently dynamic, due to complex regulation and stochastic
biochemical events. However, the effects of these dynamics on cell phenotypes can be …

Harnessing artificial intelligence to reduce phototoxicity in live imaging

E Gómez-de-Mariscal, M Del Rosario… - Journal of Cell …, 2024 - journals.biologists.com
Fluorescence microscopy is essential for studying living cells, tissues and organisms.
However, the fluorescent light that switches on fluorescent molecules also harms the …

[HTML][HTML] An open-source microscopy framework for simultaneous control of image acquisition, reconstruction, and analysis

XC Moreno, MM Silva, J Roos, F Pennacchietti… - HardwareX, 2023 - Elsevier
We present a computational framework to simultaneously perform image acquisition,
reconstruction, and analysis in the context of open-source microscopy automation. The …