A comparison of the CHARMM, AMBER and ECEPP potentials for peptides. II. φ-ψ maps for N-acetyl alanine N′-methyl amide: comparisons, contrasts and simple …

IK Roterman, MH Lambert, KD Gibson… - Journal of …, 1989 - Taylor & Francis
Abstract φ-ψ maps of N-acetyl alanine N′-methyl amide have been computed using the
CHARMM potential, the all-atom AMBER potential, and the ECEPP/2 potential, before and …

[HTML][HTML] Travelling through conformational space: an approach for analyzing the conformational behaviour of flexible molecules

J Koča - Progress in biophysics and molecular biology, 1998 - Elsevier
The applications of the single-co-ordinate-driving (SCD) method in conformational analysis
of flexible molecules have been discussed. SCD can best be characterised as travelling …

A Comparison of the CHARMM, AMBER and ECEPP Potentials for Peptides. I. Conformational Predictions for the Tandemly Repeated Peptide (Asn-Ala-Asn-Pro)9

IK Roterman, KD Gibson… - Journal of Biomolecular …, 1989 - Taylor & Francis
A search for low-energy helical and near-helical conformations of the tandemly repeated
peptide (Asn-Ala-Asn-Pro) 9 was undertaken by minimization of the CHARMM potential …

[图书][B] Computer simulations of protein structures and interactions

S Fraga, JMR Parker, JM Pocock - 1995 - Springer
The de novo prediction of the tertiary structure of peptides and proteins and, ultimately, the
development of molecular switches, synthetic vaccines, pepzymes, peptidomimetics,..., are …

Computer study of conformational flexibility of 20 common amino acids

J Koča, Z Kříž, PHJ Carlsen - Journal of Molecular Structure: Theochem, 1994 - Elsevier
Conformational potential energy hypersurfaces (PES) for the N-acetyl-N'-methylamides of all
the 20 common amino acids have been analyzed by means of the molecular mechanics …

Conformation–activity relationships and the mechanism of action of penicillin

S Wolfe, K Yang, M Khalil - Canadian Journal of Chemistry, 1988 - cdnsciencepub.com
Using the MMPEN parameters of Allinger's MMP2 (85) force field, a conformational analysis
has been performed on four biologically active penicillins; d-ampicillin, l-α …

MMPEN: Development and evaluation of penicillin parameters for Allinger's MMP2 (85) programme

S Wolfe, M Khalil, DF Weaver - Canadian Journal of Chemistry, 1988 - cdnsciencepub.com
A set of parameters, termed MMPEN, has been determined for the bicyclic nucleus of
penicillin, which, in conjunction with the appropriate parameters from MMPEP and the …

Conformational features of linear and cyclic enkephalins. A computational study

Z Křı́ž, PHJ Carlsen, J Koča - Journal of Molecular Structure: THEOCHEM, 2001 - Elsevier
A theoretical conformational study using the CICADA program package (J. Mol.
Struct.(Theochem), 337 (1995) 17) was performed for two linear enkephalins, Leu …

Sensitivity of peptide conformation to methods and geometrical parameters. A comparative ab initio and molecular mechanics study of oligomers of. alpha …

V Barone, F Fraternali, PL Cristinziano - Macromolecules, 1990 - ACS Publications
The conformational behavior of-aminoisobutyric acid has been investigated by means of ab
initio and empirical methods. Empirical computations performed with fixed bond lengths and …

Systematic analysis of reactivities and fragmentation of glutathione and its isomer GluCysGly

S Feng, X Zheng, D Wang, Y Gong… - The Journal of …, 2014 - ACS Publications
Glutathione (GSH) is the most abundant tripeptide in human cells and plays an important
role in protecting cells' integrity against oxidative stress. GSH has an unusual amide linkage …