[HTML][HTML] Use of Epic Electronic health record system for health care research: Scoping review

J Chishtie, N Sapiro, N Wiebe, L Rabatach… - Journal of medical …, 2023 - jmir.org
Background Electronic health records (EHRs) enable health data exchange across
interconnected systems from varied settings. Epic is among the 5 leading EHR providers …

Predicting functional effects of ion channel variants using new phenotypic machine learning methods

CM Boßelmann, UBS Hedrich, H Lerche… - PLOS Computational …, 2023 - journals.plos.org
Missense variants in genes encoding ion channels are associated with a spectrum of severe
diseases. Variant effects on biophysical function correlate with clinical features and can be …

[HTML][HTML] A corpus of GA4GH Phenopackets: case-level phenotyping for genomic diagnostics and discovery

D Danis, MJ Bamshad, Y Bridges… - Human Genetics and …, 2025 - cell.com
Summary The Global Alliance for Genomics and Health (GA4GH) Phenopacket Schema
was released in 2022 and approved by ISO as a standard for sharing clinical and genomic …

OARD: Open annotations for rare diseases and their phenotypes based on real-world data

C Liu, CN Ta, JM Havrilla, JG Nestor… - The American Journal of …, 2022 - cell.com
Diagnosis for rare genetic diseases often relies on phenotype-driven methods, which hinge
on the accuracy and completeness of the rare disease phenotypes in the underlying …

[HTML][HTML] UniVar: A variant interpretation platform enhancing rare disease diagnosis through robust filtering and unified analysis of SNV, INDEL, CNV and SV

CCY Au-Yeung, YT Cheung, JYT Cheng… - Computers in Biology …, 2025 - Elsevier
Background Interpreting the pathogenicity of genetic variants associated with rare diseases
is a laborious and time-consuming endeavour. To streamline the diagnostic process and …

A Machine Learning Decision Support Tool Optimizes Whole Genome Sequencing Utilization in a Neonatal Intensive Care Unit

EF Juarez, B Peterson, ES Kobayashi, S Gilmer… - medRxiv, 2024 - pmc.ncbi.nlm.nih.gov
The Mendelian Phenotype Search Engine (MPSE), a clinical decision support tool using
Natural Language Processing and Machine Learning, helped neonatologists expedite …

Termviewer–a web application for streamlined human phenotype ontology (hpo) tagging and document annotation

A Nixon, L Fang, JM Havrilla… - Chemistry & Biodiversity, 2022 - Wiley Online Library
Clinical notes from electronic health records (EHRs) contain a large amount of clinical
phenotype data on patients that can provide insights into the phenotypic presentation of …

Learning with phenotypic similarity improves the prediction of functional effects of missense variants in voltage-gated sodium channels

CM Boßelmann, UBS Hedrich, H Lerche, N Pfeifer - bioRxiv, 2022 - biorxiv.org
Background Missense variants in genes encoding voltage-gated sodium channels are
associated with a spectrum of severe diseases affecting neuronal and muscle cells, the so …

Design and implementation of a natural language processing system at the point of care: MiADE (Medical information AI Data Extractor)

J Jiang-Kells, J Brandreth, L Zhu, J Ross, Y Jani… - 2024 - researchsquare.com
Background: Well-organised electronic health records (EHR) are essential for high quality
patient care, but EHR user interfaces can be cumbersome for entry of structured information …

Edge-based Method for Phenotype Similarity: Enhancing Genetic Disease Diagnosis through Graph-based Representation and Analysis

Y Xu, X Xiong, R Xiao - 2023 - researchsquare.com
Background The rapid development of high-throughput sequencing technology has
revolutionized the diagnosis and understanding of genetic diseases. However, the …