Aptamers in analytics

M Ilgu, M Nilsen-Hamilton - Analyst, 2016 - pubs.rsc.org
Nucleic acid aptamers are promising alternatives to antibodies in analytics. They are
generally obtained through an iterative SELEX protocol that enriches a population of …

[HTML][HTML] Modern affinity reagents: Recombinant antibodies and aptamers

K Groff, J Brown, AJ Clippinger - Biotechnology advances, 2015 - Elsevier
Affinity reagents are essential tools in both basic and applied research; however, there is a
growing concern about the reproducibility of animal-derived monoclonal antibodies. The …

Aptamers: multifunctional molecules for biomedical research

J Banerjee, M Nilsen-Hamilton - Journal of molecular medicine, 2013 - Springer
Aptamers are single-stranded oligonucleotides that fold into well-defined three-dimensional
shapes, allowing them to bind their targets with high affinity and specificity. They can be …

Aptamers targeting membrane proteins for sensor and diagnostic applications

N Kara, N Ayoub, H Ilgu, D Fotiadis, M Ilgu - Molecules, 2023 - mdpi.com
Many biological processes (physiological or pathological) are relevant to membrane
proteins (MPs), which account for almost 30% of the total of human proteins. As such, MPs …

Fluorescence-based strategies to investigate the structure and dynamics of aptamer-ligand complexes

C Perez-Gonzalez, DA Lafontaine, JC Penedo - Frontiers in chemistry, 2016 - frontiersin.org
In addition to the helical nature of double-stranded DNA and RNA, single-stranded
oligonucleotides can arrange themselves into tridimensional structures containing loops …

Specificity and ligand affinities of the cocaine aptamer: Impact of structural features and physiological NaCl

A Sachan, M Ilgu, A Kempema, GA Kraus… - Analytical …, 2016 - ACS Publications
The cocaine aptamer has been seen as a good candidate for development as a probe for
cocaine in many contexts. Here, we demonstrate that the aptamer binds cocaine …

Multivalent aptamer meshed open pore membrane and signal amplification for high-flux and ultra sensitive whole cell detection of E. coli O157: H7 in complex food …

X Hao, Z Wang, JP St-Pierre, H Dan, M Lin… - Sensors and Actuators B …, 2023 - Elsevier
We develop a multivalent aptamer meshed open pore membrane with a signal amplification
method as a simple and robust platform for sensitive, robust, and high-flux detection of E …

Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters

I Shin, J Ray, V Gupta, M Ilgu, J Beasley… - Nucleic acids …, 2014 - academic.oup.com
We describe a ribonucleic acid (RNA) reporter system for live-cell imaging of gene
expression to detect changes in polymerase II activity on individual promoters in individual …

Label-free determination of the dissociation constant of small molecule-aptamer interaction by isothermal titration calorimetry

M Vogel, B Suess - Nucleic Acid Aptamers: Selection, Characterization …, 2016 - Springer
Isothermal titration calorimetry (ITC) is a powerful label-free technique to determine the
binding constant as well as thermodynamic parameters of a binding reaction and is …

An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures

M Ilgu, DB Fulton, RM Yennamalli, MH Lamm, TZ Sen… - RNA, 2014 - rnajournal.cshlp.org
Aptamers can be highly specific for their targets, which implies precise molecular recognition
between aptamer and target. However, as small polymers, their structures are more subject …