Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework

PD Jagtap, JE Johnson, G Onsongo… - Journal of proteome …, 2014 - ACS Publications
Proteogenomics combines large-scale genomic and transcriptomic data with mass-
spectrometry-based proteomic data to discover novel protein sequence variants and …

Quest for missing proteins: update 2015 on chromosome-centric human proteome project

P Horvatovich, EK Lundberg, YJ Chen… - Journal of proteome …, 2015 - ACS Publications
This paper summarizes the recent activities of the Chromosome-Centric Human Proteome
Project (C-HPP) consortium, which develops new technologies to identify yet-to-be …

Proteomics and integrative genomics for unraveling the mysteries of spermatogenesis: the strategies of a team

E Com, N Melaine, F Chalmel, C Pineau - Journal of Proteomics, 2014 - Elsevier
The strikingly complex structural organization of the mammalian testis in vivo creates
particular difficulties for studies of its organization, function and regulation. These difficulties …

Identification of missing proteins defined by chromosome-centric proteome project in the cytoplasmic detergent-insoluble proteins

Y Chen, Y Li, J Zhong, J Zhang, Z Chen… - Journal of Proteome …, 2015 - ACS Publications
Finding protein evidence (PE) for protein coding genes is a primary task of the Phase I
Chromosome-Centric Human Proteome Project (C-HPP). Currently, there are 2948 PE level …

Discovery of novel genes and gene isoforms by integrating transcriptomic and proteomic profiling from mouse liver

P Wu, H Zhang, W Lin, Y Hao, L Ren… - Journal of proteome …, 2014 - ACS Publications
Comprehensively identifying gene expression in both transcriptomic and proteomic levels of
one tissue is a prerequisite for a deeper understanding of its biological functions. Alternative …

CAPER 3.0: A scalable cloud-based system for data-intensive analysis of chromosome-centric Human Proteome Project data sets

S Yang, X Zhang, L Diao, F Guo, D Wang… - Journal of proteome …, 2015 - ACS Publications
The Chromosome-centric Human Proteome Project (C-HPP) aims to catalog genome-
encoded proteins using a chromosome-by-chromosome strategy. As the C-HPP proceeds …

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows

O Sallou, PD Duek, TA Darde, O Collin, L Lane… - Database, 2016 - academic.oup.com
Among the 20 000 human gene products predicted from genome annotation, about 3000
still lack validation at protein level. We developed PepPSy, a user-friendly gene expression …

MI-PVT: a tool for visualizing the chromosome-centric human proteome

B Panwar, R Menon, R Eksi, GS Omenn… - Journal of proteome …, 2015 - ACS Publications
We have developed the web-based Michigan Proteome Visualization Tool (MI-PVT) to
visualize and compare protein expression and isoform-level function across human …

Identification of Missing Proteins: Toward the Completion of Human Proteome

Á Végvári - Genomics and Proteomics for Clinical Discovery and …, 2014 - Springer
Undoubtedly, one of the greatest achievements of scientific research was the completion of
sequencing the human genome in 2003 that is still unmatched in size of collaborative efforts …

[引用][C] 中国染色体蛋白质组计划研究进展

彭雪辉, 苏纳, 李宗桃, 徐平 - 生命科学, 2016