Assessing the importance of proton transfer reactions in DNA

D Jacquemin, J Zuniga, A Requena… - Accounts of chemical …, 2014 - ACS Publications
Conspectus Although engineered by millions of years of evolution, the cellular machinery is
not flawless, and errors regularly appear during DNA replication. The subsequent alteration …

Can tautomerization of the A·T Watson–Crick base pair via double proton transfer provoke point mutations during DNA replication? A comprehensive QM and QTAIM …

OO Brovarets, DM Hovorun - Journal of Biomolecular Structure and …, 2014 - Taylor & Francis
Trying to answer the question posed in the title, we have carried out a detailed theoretical
investigation of the biologically important mechanism of the tautomerization of the A· T …

Influence of coupling and embedding schemes on QM size convergence in QM/MM approaches for the example of a proton transfer in DNA

S Roßbach, C Ochsenfeld - Journal of chemical theory and …, 2017 - ACS Publications
The influence of embedding and coupling schemes on the convergence of the QM size in
the QM/MM approach is investigated for the transfer of a proton in a DNA base pair. We find …

A review on point mutations via proton transfer in DNA base pairs in the absence and presence of electric fields

AC Pushkaran, AA Arabi - International Journal of Biological …, 2024 - Elsevier
This is a comprehensive review that focuses on spontaneous mutations that may occur
during DNA replication, the fundamental process responsible for transferring genetic …

Why the tautomerization of the G·C Watson–Crick base pair via the DPT does not cause point mutations during DNA replication? QM and QTAIM comprehensive …

OO Brovarets', DM Hovorun - Journal of Biomolecular Structure and …, 2014 - Taylor & Francis
The ground-state tautomerization of the G· C Watson–Crick base pair by the double proton
transfer (DPT) was comprehensively studied in vacuo and in the continuum with a low …

Human DNMT1 transition state structure

Q Du, Z Wang, VL Schramm - Proceedings of the National …, 2016 - National Acad Sciences
Human DNA methyltransferase 1 (DNMT1) maintains the epigenetic state of DNA by
replicating CpG methylation signatures from parent to daughter strands, producing heritable …

The influence of base pair tautomerism on single point mutations in aqueous DNA

A Gheorghiu, PV Coveney, AA Arabi - Interface focus, 2020 - royalsocietypublishing.org
The relationship between base pair hydrogen bond proton transfer and the rate of
spontaneous single point mutations at ambient temperatures and pressures in aqueous …

New structural hypostases of the A· T and G· C Watson–Crick DNA base pairs caused by their mutagenic tautomerisation in a wobble manner: A QM/QTAIM prediction

OB Ol'ha, DM Hovorun - RSC advances, 2015 - pubs.rsc.org
It is widely known that canonical DNA base pairs preserve the Watson–Crick (WC) scheme
of pairing that enables accurate transfer of genetic information across generations. Herein …

Is the DPT tautomerization of the long A· G Watson–Crick DNA base mispair a source of the adenine and guanine mutagenic tautomers? A QM and QTAIM response …

OO Brovarets', RO Zhurakivsky… - Journal of …, 2014 - Wiley Online Library
Herein, we first address the question posed in the title by establishing the tautomerization
trajectory via the double proton transfer of the adenine· guanine (A· G) DNA base mispair …

DPT tautomerisation of the wobble guanine· thymine DNA base mispair is not mutagenic: QM and QTAIM arguments

OO Brovarets', RO Zhurakivsky… - Journal of Biomolecular …, 2015 - Taylor & Francis
We have shown for the first time, connecting QM methods with QTAIM analysis and using the
methodology of the sweeps of the energetical, electron-topological and geometrical …