Macromolecular crowding is more than hard-core repulsions

SL Speer, CJ Stewart, L Sapir… - Annual Review of …, 2022 - annualreviews.org
Cells are crowded, but proteins are almost always studied in dilute aqueous buffer. We
review the experimental evidence that crowding affects the equilibrium thermodynamics of …

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

HX Zhou, G Rivas, AP Minton - Annu. Rev. Biophys., 2008 - annualreviews.org
Expected and observed effects of volume exclusion on the free energy of rigid and flexible
macromolecules in crowded and confined systems, and consequent effects of crowding and …

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

SR McGuffee, AH Elcock - PLoS computational biology, 2010 - journals.plos.org
A longstanding question in molecular biology is the extent to which the behavior of
macromolecules observed in vitro accurately reflects their behavior in vivo. A number of …

Hydrogen exchange mass spectrometry for the analysis of protein dynamics

TE Wales, JR Engen - Mass spectrometry reviews, 2006 - Wiley Online Library
Hydrogen exchange coupled to mass spectrometry (MS) has become a valuable analytical
tool for the study of protein dynamics. By combining information about protein dynamics with …

Macromolecular crowding and protein stability

Y Wang, M Sarkar, AE Smith, AS Krois… - Journal of the American …, 2012 - ACS Publications
An understanding of cellular chemistry requires knowledge of how crowded environments
affect proteins. The influence of crowding on protein stability arises from two phenomena …

Protein adsorption onto nanomaterials for the development of biosensors and analytical devices: A review

SA Bhakta, E Evans, TE Benavidez, CD Garcia - Analytica chimica acta, 2015 - Elsevier
An important consideration for the development of biosensors is the adsorption of the
biorecognition element to the surface of a substrate. As the first step in the immobilization …

Physical limits of cells and proteomes

KA Dill, K Ghosh, JD Schmit - Proceedings of the National …, 2011 - National Acad Sciences
What are the physical limits to cell behavior? Often, the physical limitations can be
dominated by the proteome, the cell's complement of proteins. We combine known protein …

Thermodynamics of protein destabilization in live cells

J Danielsson, X Mu, L Lang, H Wang… - Proceedings of the …, 2015 - National Acad Sciences
Although protein folding and stability have been well explored under simplified conditions in
vitro, it is yet unclear how these basic self-organization events are modulated by the …

How can biochemical reactions within cells differ from those in test tubes?

AP Minton - Journal of cell science, 2006 - journals.biologists.com
Nonspecific interactions between individual macro-molecules and their immediate
surroundings (background interactions') within a medium as heterogeneous and highly …

Soft interactions and crowding

M Sarkar, C Li, GJ Pielak - Biophysical reviews, 2013 - Springer
The intracellular milieu is complex, heterogeneous and crowded—an environment vastly
different from dilute solutions in which most biophysical studies are performed. The crowded …