Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

C Knief - Frontiers in microbiology, 2015 - frontiersin.org
Methane-oxidizing bacteria are characterized by their capability to grow on methane as sole
source of carbon and energy. Cultivation-dependent and-independent methods have …

Biogenic volatile emissions from the soil

J Peñuelas, D Asensio, D Tholl, K Wenke… - Plant, cell & …, 2014 - Wiley Online Library
Volatile compounds are usually associated with an appearance/presence in the
atmosphere. Recent advances, however, indicated that the soil is a huge reservoir and …

Conventional methanotrophs are responsible for atmospheric methane oxidation in paddy soils

Y Cai, Y Zheng, PLE Bodelier, R Conrad… - Nature communications, 2016 - nature.com
Soils serve as the biological sink of the potent greenhouse gas methane with exceptionally
low concentrations of∼ 1.84 ppmv in the atmosphere. The as-yet-uncultivated methane …

Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays

N Fierer, JA Jackson, R Vilgalys… - Applied and …, 2005 - Am Soc Microbiol
Here we describe a quantitative PCR-based approach to estimating the relative abundances
of major taxonomic groups of bacteria and fungi in soil. Primers were thoroughly tested for …

Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology

CJ Smith, AM Osborn - FEMS microbiology ecology, 2009 - academic.oup.com
Abstract Quantitative PCR (Q-PCR or real-time PCR) approaches are now widely applied in
microbial ecology to quantify the abundance and expression of taxonomic and functional …

Quantitative Detection of the nosZ Gene, Encoding Nitrous Oxide Reductase, and Comparison of the Abundances of 16S rRNA, narG, nirK, and nosZ Genes in …

S Henry, D Bru, B Stres, S Hallet… - Applied and …, 2006 - Am Soc Microbiol
Nitrous oxide (N2O) is an important greenhouse gas in the troposphere controlling ozone
concentration in the stratosphere through nitric oxide production. In order to quantify bacteria …

Quantification of denitrifying bacteria in soils by nirK gene targeted real-time PCR

S Henry, E Baudoin, JC López-Gutiérrez… - Journal of …, 2004 - Elsevier
Denitrification, the reduction of nitrate to nitrous oxide or dinitrogen, is the major biological
mechanism by which fixed nitrogen returns to the atmosphere from soil and water …

Lack of functional redundancy in the relationship between microbial diversity and ecosystem functioning

M Delgado‐Baquerizo, L Giaramida… - Journal of …, 2016 - Wiley Online Library
Biodiversity is declining world‐wide with detrimental effects on ecosystems. However, we
lack a quantitative understanding of the shape of the relationship between microbial …

Molecular techniques to assess microbial community structure, function, and dynamics in the environment

G Rastogi, RK Sani - Microbes and microbial technology: Agricultural and …, 2011 - Springer
Culture-based methods are important in investigating the microbial ecology of natural and
anthropogenically impacted environments, but they are extremely biased in their evaluation …

Quantification of a novel group of nitrate-reducing bacteria in the environment by real-time PCR

JC López-Gutiérrez, S Henry, S Hallet… - Journal of …, 2004 - Elsevier
Nitrate reduction is performed by phylogenetically diverse bacteria. Analysis of narG (alpha
subunit of the membrane bound nitrate reductase) trees constructed using environmental …