Tight-binding modeling of nucleic acid sequences: Interplay between various types of order or disorder and charge transport

K Lambropoulos, C Simserides - Symmetry, 2019 - mdpi.com
This review is devoted to tight-binding (TB) modeling of nucleic acid sequences like DNA
and RNA. It addresses how various types of order (periodic, quasiperiodic, fractal) or …

Attochemistry regulation of charge migration

AS Folorunso, F Mauger, KA Hamer… - The Journal of …, 2023 - ACS Publications
Charge migration (CM) is a coherent attosecond process that involves the movement of
localized holes across a molecule. To determine the relationship between a molecule's …

Predicting the DNA conductance using a deep feedforward neural network model

A Aggarwal, V Vinayak, S Bag… - Journal of Chemical …, 2020 - ACS Publications
Double-stranded DNA (dsDNA) has been established as an efficient medium for charge
migration, bringing it to the forefront of the field of molecular electronics and biological …

Periodic, quasiperiodic, fractal, Kolakoski, and random binary polymers: Energy structure and carrier transport

K Lambropoulos, C Simserides - Physical Review E, 2019 - APS
We study periodic, quasiperiodic (Thue-Morse, Fibonacci, period doubling, Rudin-Shapiro),
fractal (Cantor, generalized Cantor), Kolakoski, and random binary sequences using a tight …

Electron/hole mobilities of periodic dna and nucleobase structures from large-scale dft calculations

H Kwon, A Kumar, M Del Ben… - The Journal of Physical …, 2023 - ACS Publications
Electron/hole transfer mechanisms in DNA and polynucleotide structures continue to garner
considerable interest as emerging charge-transport systems and molecular electronics. To …

Effects of structural dynamics on charge carrier transfer in B-DNA: a combined MD and RT-TDDFT study

M Mantela, A Morphis, K Lambropoulos… - The Journal of …, 2021 - ACS Publications
Hole transfer along the axis of duplex DNA has been the focus of physical chemistry
research for decades, with implications in diverse fields, from nanotechnology to cell …

A DFT study of energetic and structural properties of a full turn of A-form DNA under relaxed and stretching conditions

Y Liu, X Ren, L He - The Journal of Chemical Physics, 2019 - pubs.aip.org
We carried out a first-principles quantum-mechanical study of a set of full-turn A-form DNA
oligonucleotides using density functional approximations. The structural features of the fully …

Quasi-periodic and fractal polymers: Energy structure and carrier transfer

M Mantela, K Lambropoulos, M Theodorakou… - Materials, 2019 - mdpi.com
We study the energy structure and the coherent transfer of an extra electron or hole along
aperiodic polymers made of N monomers, with fixed boundaries, using B-DNA as our …

Revealing charge-transfer dynamics at electrified sulfur cathodes using constrained density functional theory

Y Aierken, A Agrawal, M Sun, M Melander… - The Journal of …, 2021 - ACS Publications
To understand and control the behavior of electrochemical systems, including batteries and
electrocatalysts, we seek molecular-level details of the charge transfer mechanisms at …

Periodic polymers with increasing repetition unit: Energy structure and carrier transfer

K Lambropoulos, C Vantaraki, P Bilia, M Mantela… - Physical Review E, 2018 - APS
We study the energy structure and the transfer of an extra electron or hole along periodic
polymers made of N monomers, with a repetition unit made of P monomers, using a tight …