Review of three-dimensional liquid chromatography platforms for bottom-up proteomics

VA Duong, JM Park, H Lee - International Journal of Molecular Sciences, 2020 - mdpi.com
Proteomics is a large-scale study of proteins, aiming at the description and characterization
of all expressed proteins in biological systems. The expressed proteins are typically highly …

Membrane proteomics by high performance liquid chromatography–tandem mass spectrometry: Analytical approaches and challenges

D Vuckovic, LF Dagley, AW Purcell, A Emili - Proteomics, 2013 - Wiley Online Library
Membrane proteins (MP s) play diverse biologically important structural and functional roles
including molecular transport, cell communication, and signal transduction. The dysfunctions …

Proteomic analysis of Chinese hamster ovary cells

D Baycin-Hizal, DL Tabb, R Chaerkady… - Journal of proteome …, 2012 - ACS Publications
To complement the recent genomic sequencing of Chinese hamster ovary (CHO) cells,
proteomic analysis was performed on CHO cells including the cellular proteome, secretome …

Recent advances on multidimensional liquid chromatography–mass spectrometry for proteomics: From qualitative to quantitative analysis—A review

Q Wu, H Yuan, L Zhang, Y Zhang - Analytica chimica acta, 2012 - Elsevier
With the acceleration of proteome research, increasing attention has been paid to
multidimensional liquid chromatography–mass spectrometry (MDLC–MS) due to its high …

Capillary zone electrophoresis–mass spectrometry with microliter-scale loading capacity, 140 min separation window and high peak capacity for bottom-up …

D Chen, X Shen, L Sun - Analyst, 2017 - pubs.rsc.org
Better peptide separation is required for bottom-up proteomics for further improving the
proteome coverage. The two-dimensional liquid chromatography (2D-LC) systems only …

Serially coupled columns liquid chromatography: An alternative separation tool

X Gong, W Chen, K Zhang, T Li, Q Song - Journal of Chromatography A, 2023 - Elsevier
Despite the rapid development of liquid chromatography (LC) in recent decades, it remains
a challenge to achieve the desired chromatographic separation of complex matrices using a …

Molecular dynamics simulation-assisted ionic liquid screening for deep coverage proteome analysis

F Fang, Q Zhao, H Chu, M Liu, B Zhao, Z Liang… - Molecular & cellular …, 2020 - ASBMB
In-depth coverage of proteomic analysis could enhance our understanding to the
mechanism of the protein functions. Unfortunately, many highly hydrophobic proteins and …

Advances of ionic liquids-based methods for protein analysis

Q Zhao, H Chu, B Zhao, Z Liang, L Zhang… - TrAC Trends in Analytical …, 2018 - Elsevier
Ionic liquids (ILs) as promising solvents have been quickly designed and applied in many
areas spanning from electrochemistry, energy, chemical synthesis and catalysis to …

Construction of a microfluidic platform integrating online protein fractionation, denaturation, digestion, and peptide enrichment

ZH Wei, X Zhang, X Zhao, YJ Jiao, YP Huang, ZS Liu - Talanta, 2021 - Elsevier
Microfluidic system with multi-functional integration of high-throughput protein/peptide
separation ability has great potential for improving the identification capacity of biological …

1-Dodecyl-3-methylimidazolium chloride-assisted sample preparation method for efficient integral membrane proteome analysis

Q Zhao, F Fang, Y Liang, H Yuan, K Yang… - Analytical …, 2014 - ACS Publications
Due to their extremely hydrophobic nature, the analysis of integral membrane proteins
(IMPs) is of great challenge. Although various additives have been applied to improve the …