Environmental DNA metabarcoding: A novel method for biodiversity monitoring of marine fish communities

M Miya - Annual Review of Marine Science, 2022 - annualreviews.org
Environmental DNA (eDNA) is genetic material that has been shed from macroorganisms. It
has received increased attention as an indirect marker for biodiversity monitoring. This …

MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples

M Miya, RO Gotoh, T Sado - Fisheries Science, 2020 - Springer
We reviewed the current methodology and practices of the DNA metabarcoding approach
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …

Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment

F Keck, RC Blackman, R Bossart… - Molecular …, 2022 - Wiley Online Library
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …

Comparing eDNA metabarcoding primers for assessing fish communities in a biodiverse estuary

G Kumar, AM Reaume, E Farrell, MR Gaither - PloS one, 2022 - journals.plos.org
Metabarcoding of environmental DNA is increasingly used for biodiversity assessments in
aquatic communities. The efficiency and outcome of these efforts are dependent upon either …

Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods

J Hallam, EL Clare, JI Jones, JJ Day - Environmental DNA, 2021 - Wiley Online Library
While many studies have considered the ability of eDNA to assess animal communities in
lacustrine settings, fewer have considered riverine systems, particularly those spanning the …

Using environmental DNA for biomonitoring of freshwater fish communities: Comparison with established gillnet surveys in a boreal hydroelectric impoundment

D Boivin‐Delisle, M Laporte, F Burton… - Environmental …, 2021 - Wiley Online Library
Accurate data characterizing species distribution and abundance are critical for
conservation and management of aquatic resources. Inventory methods, such as gillnet …

Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems

A Polanco F, E Richards, B Flück, A Valentini… - Environmental …, 2021 - Wiley Online Library
Through the development of environmental DNA (eDNA) metabarcoding, in situ monitoring
of organisms is becoming easier and promises a revolution in our approaches to detect …

Combining sampling gear to optimally inventory species highlights the efficiency of eDNA metabarcoding

KJ Andres, TD Lambert, DM Lodge, J Andrés… - Environmental …, 2023 - Wiley Online Library
Biodiversity surveys may require the use of multiple types of sampling gear to maximize the
efficiency of species detections, yet few studies have investigated how to optimally distribute …

[HTML][HTML] Comparison of environmental DNA metabarcoding and bottom trawling for detecting seasonal fish communities and habitat preference in a highly disturbed …

P Jiang, S Zhang, S Xu, P Xiong, Y Cao, Z Chen… - Ecological Indicators, 2023 - Elsevier
Environmental DNA (eDNA) metabarcoding has been used to study fish diversity in various
aquatic ecosystems. However, studies on fish community structure in estuarine ecosystems …

Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves

E Boulanger, N Loiseau, A Valentini… - … of the Royal …, 2021 - royalsocietypublishing.org
Although we are currently experiencing worldwide biodiversity loss, local species richness
does not always decline under anthropogenic pressure. This conservation paradox may …