Understanding nucleic acid–ion interactions

J Lipfert, S Doniach, R Das… - Annual review of …, 2014 - annualreviews.org
Ions surround nucleic acids in what is referred to as an ion atmosphere. As a result, the
folding and dynamics of RNA and DNA and their complexes with proteins and with each …

How random are intrinsically disordered proteins? A small angle scattering perspective

V Receveur-Bréchot, D Durand - Current Protein and Peptide …, 2012 - ingentaconnect.com
While the crucial role of intrinsically disordered proteins (IDPs) in the cell cycle is now
recognized, deciphering their molecular mode of action at the structural level still remains …

Accurate SAXS profile computation and its assessment by contrast variation experiments

D Schneidman-Duhovny, M Hammel, JA Tainer… - Biophysical journal, 2013 - cell.com
A major challenge in structural biology is to characterize structures of proteins and their
assemblies in solution. At low resolution, such a characterization may be achieved by small …

ModBase, a database of annotated comparative protein structure models and associated resources

U Pieper, BM Webb, GQ Dong… - Nucleic acids …, 2014 - academic.oup.com
Abstract ModBase (http://salilab. org/modbase) is a database of annotated comparative
protein structure models. The models are calculated by ModPipe, an automated modeling …

[图书][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

Review of the fundamental theories behind small angle X-ray scattering, molecular dynamics simulations, and relevant integrated application

L Boldon, F Laliberte, L Liu - Nano reviews, 2015 - Taylor & Francis
In this paper, the fundamental concepts and equations necessary for performing small angle
X-ray scattering (SAXS) experiments, molecular dynamics (MD) simulations, and MD-SAXS …

Small-angle X-ray scattering on biological macromolecules and nanocomposites in solution

CE Blanchet, DI Svergun - Annual review of physical chemistry, 2013 - annualreviews.org
Small-angle X-ray scattering (SAXS) is a powerful method to study the structural properties
of materials at the nanoscale. Recent progress in instrumentation and analysis methods has …

WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics

CJ Knight, JS Hub - Nucleic acids research, 2015 - academic.oup.com
Small-and wide-angle X-ray scattering (SWAXS) has evolved into a powerful tool to study
biological macromolecules in solution. The interpretation of SWAXS curves requires their …

Super-resolution in solution X-ray scattering and its applications to structural systems biology

RP Rambo, JA Tainer - Annual review of biophysics, 2013 - annualreviews.org
Small-angle X-ray scattering (SAXS) is a robust technique for the comprehensive structural
characterizations of biological macromolecular complexes in solution. Here, we present a …

Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS)

MA Graewert, DI Svergun - Current opinion in structural biology, 2013 - Elsevier
Highlights•Popularity of SAXS/WAXS for structural analysis has gained substantially.•
Remarkable developments in hardware and software allow for high-throughput …