Contemporary approaches to site-selective protein modification

EA Hoyt, PMSD Cal, BL Oliveira… - Nature Reviews …, 2019 - nature.com
Proteins constitute the majority of nature's worker biomolecules. Designed for specific
functions, complex tertiary structures make proteins ideal candidates for analysing natural …

Site-specific incorporation of unnatural amino acids into Escherichia coli recombinant protein: methodology development and recent achievement

S Smolskaya, YA Andreev - Biomolecules, 2019 - mdpi.com
More than two decades ago a general method to genetically encode noncanonical or
unnatural amino acids (NAAs) with diverse physical, chemical, or biological properties in …

Design, synthesis, and testing toward a 57-codon genome

N Ostrov, M Landon, M Guell, G Kuznetsov, J Teramoto… - Science, 2016 - science.org
Recoding—the repurposing of genetic codons—is a powerful strategy for enhancing
genomes with functions not commonly found in nature. Here, we report computational …

Genetic encoding of three distinct noncanonical amino acids using reprogrammed initiator and nonsense codons

JM Tharp, O Vargas-Rodriguez, A Schepartz… - ACS chemical …, 2021 - ACS Publications
We recently described an orthogonal initiator tRNA (i tRNATy2) that can initiate protein
synthesis with noncanonical amino acids (ncAAs) in response to the UAG nonsense codon …

Reassignment of a rare sense codon to a non-canonical amino acid in Escherichia coli

T Mukai, A Yamaguchi, K Ohtake… - Nucleic acids …, 2015 - academic.oup.com
The immutability of the genetic code has been challenged with the successful reassignment
of the UAG stop codon to non-natural amino acids in Escherichia coli. In the present study …

Molecular biology interventions for activity improvement and production of industrial enzymes

SK Bhatia, N Vivek, V Kumar, N Chandel, M Thakur… - Bioresource …, 2021 - Elsevier
Metagenomics and directed evolution technology have brought a revolution in search of
novel enzymes from extreme environment and improvement of existing enzymes and tuning …

Emergent rules for codon choice elucidated by editing rare arginine codons in Escherichia coli

MG Napolitano, M Landon, CJ Gregg… - Proceedings of the …, 2016 - National Acad Sciences
The degeneracy of the genetic code allows nucleic acids to encode amino acid identity as
well as noncoding information for gene regulation and genome maintenance. The rare …

Escherichia coli Extract-Based Cell-Free Expression System as an Alternative for Difficult-to-Obtain Protein Biosynthesis

S Smolskaya, YA Logashina, YA Andreev - International Journal of …, 2020 - mdpi.com
Before utilization in biomedical diagnosis, therapeutic treatment, and biotechnology, the
diverse variety of peptides and proteins must be preliminarily purified and thoroughly …

Application of codon usage and context analysis in genes up-or down-regulated in neurodegeneration and cancer to combat comorbidities

R Khandia, MK Pandey, MEA Zaki… - Frontiers in Molecular …, 2023 - frontiersin.org
Introduction Neurodegeneration and cancer present in comorbidities with inverse effects
due to the expression of genes and pathways acting in opposition. Identifying and studying …

Engineering tRNAs for the Ribosomal Translation of Non-proteinogenic Monomers

M Sigal, S Matsumoto, A Beattie, T Katoh… - Chemical …, 2024 - ACS Publications
Ribosome-dependent protein biosynthesis is an essential cellular process mediated by
transfer RNAs (tRNAs). Generally, ribosomally synthesized proteins are limited to the 22 …