Advancements in oncoproteomics technologies: Treading toward translation into clinical practice

A Punetha, D Kotiya - Proteomes, 2023 - mdpi.com
Proteomics continues to forge significant strides in the discovery of essential biological
processes, uncovering valuable information on the identity, global protein abundance …

Extracellular Matrix Interactome in Modulating Vascular Homeostasis and Remodeling

Y Fu, Y Zhou, K Wang, Z Li, W Kong - Circulation Research, 2024 - Am Heart Assoc
The ECM (extracellular matrix) is a major component of the vascular microenvironment that
modulates vascular homeostasis. ECM proteins include collagens, elastin, noncollagen …

Advancing In-Depth N-Terminomics Detection with a Cleavable 2-Pyridinecarboxyaldehyde Probe

X Song, X Ren, Q Mei, H Liu… - Journal of the American …, 2024 - ACS Publications
Proteolysis, an irreversible post-translational modification catalyzed by proteases, plays a
crucial role in various biological processes. Exploring abnormally hydrolyzed proteins in …

TermineR: Extracting information on endogenous proteolytic processing from shotgun proteomics data

M Cosenza‐Contreras, A Seredynska, D Vogele… - …, 2024 - Wiley Online Library
State‐of‐the‐art mass spectrometers combined with modern bioinformatics algorithms for
peptide‐to‐spectrum matching (PSM) with robust statistical scoring allow for more variable …

A Systematic Investigation of Proteoforms with N‐Terminal Glycine and Their Dynamics Reveals Its Impacts on Protein Stability

S Xu, X Xu, Z Wang, R Wu - Angewandte Chemie, 2024 - Wiley Online Library
The N‐termini of proteins can regulate their degradation, and the same protein with different
N‐termini may have distinct dynamics. Recently, it was found that N‐terminal glycine can …

Separation methods for system‐wide profiling of protein terminome

R Wang, Z Wang, H Lu - Proteomics, 2023 - Wiley Online Library
Protein N‐and C‐termini have specific biochemical properties and functions. They play vital
roles in various biological processes, such as protein stability and localization. In addition …

Protein processing in plant mitochondria compared to yeast and mammals

M Heidorn-Czarna, A Maziak, H Janska - Frontiers in Plant Science, 2022 - frontiersin.org
Limited proteolysis, called protein processing, is an essential post-translational mechanism
that controls protein localization, activity, and in consequence, function. This process is …

Ion Mobility–Based Enrichment-Free N-Terminomics Analysis Reveals Novel Legumain Substrates in Murine Spleen

AR Ziegler, A Dufour, NE Scott… - Molecular & Cellular …, 2024 - ASBMB
Aberrant levels of the asparaginyl endopeptidase legumain have been linked to
inflammation, neurodegeneration, and cancer, yet our understanding of this protease is …

Identification of SARS-CoV-2 Main protease (Mpro) cleavage sites using two-dimensional electrophoresis and in silico cleavage site prediction

N Miltner, G Kalló, É Csősz, M Miczi, T Nagy… - International Journal of …, 2023 - mdpi.com
The main protease (Mpro) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-
2) plays a crucial role in its life cycle. The Mpro-mediated limited proteolysis of the viral …

Insight into the structural basis of the dual inhibitory mode of Lima bean (Phaseolus lunatus) serine protease inhibitor

MS Ahmad, Z Akbar… - … : Structure, Function, and …, 2023 - Wiley Online Library
Bovine pancreatic trypsin was crystallized, in‐complex with Lima bean trypsin inhibitor
(LBTI)(Phaseolus lunatus L.), in the form of a ternary complex. LBTI is a Bowman–Birk‐type …