[HTML][HTML] Exploring absent protein function in yeast: assaying post translational modification and human genetic variation

CS Moesslacher, JM Kohlmayr, U Stelzl - Microbial Cell, 2021 - ncbi.nlm.nih.gov
Yeast is a valuable eukaryotic model organism that has evolved many processes conserved
up to humans, yet many protein functions, including certain DNA and protein modifications …

High-throughput profiling of sequence recognition by tyrosine kinases and SH2 domains using bacterial peptide display

A Li, R Voleti, M Lee, D Gagoski, NH Shah - Elife, 2023 - elifesciences.org
Tyrosine kinases and SH2 (phosphotyrosine recognition) domains have binding specificities
that depend on the amino acid sequence surrounding the target (phospho) tyrosine residue …

Illuminating the kinome: Visualizing real-time kinase activity in biological systems using genetically encoded fluorescent protein-based biosensors

DL Schmitt, S Mehta, J Zhang - Current opinion in chemical biology, 2020 - Elsevier
Genetically encoded fluorescent protein-based kinase biosensors are a central tool for
illumination of the kinome. The adaptability and versatility of biosensors have allowed for …

A human kinase yeast array for the identification of kinases modulating phosphorylation‐dependent protein–protein interactions

S Jehle, N Kunowska, N Benlasfer… - Molecular systems …, 2022 - embopress.org
Protein kinases play an important role in cellular signaling pathways and their dysregulation
leads to multiple diseases, making kinases prime drug targets. While more than 500 human …

The fitness cost of spurious phosphorylation

D Bradley, A Hogrebe, R Dandage, AK Dubé… - The EMBO …, 2024 - embopress.org
The fidelity of signal transduction requires the binding of regulatory molecules to their
cognate targets. However, the crowded cell interior risks off-target interactions between …

Evolutionary divergence of phosphorylation to regulate interactive protein networks in lower and higher species

C Pasquier, A Robichon - International Journal of Molecular Sciences, 2022 - mdpi.com
The phosphorylation of proteins affects their functions in extensively documented
circumstances. However, the role of phosphorylation in many interactive networks of …

Unbiased phosphoproteomics analysis unveils modulation of insulin signaling by extramitotic CDK1 kinase activity in human myotubes

B Han, GX Li, WL Liew, E Chan, S Huang, CM Khoo… - bioRxiv, 2023 - biorxiv.org
Sensitivity and plasticity of insulin signaling and glucose uptake in skeletal muscle depends
on determinants such as genetic variation and obesity. We collected muscle biopsies and …

multiSLIDE is a web server for exploring connected elements of biological pathways in multi-omics data

S Ghosh, A Datta, H Choi - Nature Communications, 2021 - nature.com
Quantitative multi-omics data are difficult to interpret and visualize due to large volume of
data, complexity among data features, and heterogeneity of information represented by …

Ibrutinib as a potential therapeutic option for HER2 overexpressing breast cancer–the role of STAT3 and p21

CB Prabaharan, AB Yang, D Chidambaram… - Investigational new …, 2020 - Springer
Treatment response rates to current anticancer therapies for HER2 overexpressing breast
cancer are limited and are associated with severe adverse drug reactions. Tyrosine kinases …

De Novo Linear Phosphorylation Site Motifs for BCR-ABL Kinase Revealed by Phospho-Proteomics in Yeast

M Smolnig, S Fasching, U Stelzl - Journal of Proteome Research, 2023 - ACS Publications
BCR-ABL is the oncogenic fusion product of tyrosine kinase ABL1 and a highly frequent
driver of acute lymphocytic leukemia (ALL) and chronic myeloid leukemia (CML). The kinase …