The epithelial–mesenchymal plasticity landscape: principles of design and mechanisms of regulation

J Haerinck, S Goossens, G Berx - Nature Reviews Genetics, 2023 - nature.com
Epithelial–mesenchymal plasticity (EMP) enables cells to interconvert between several
states across the epithelial–mesenchymal landscape, thereby acquiring hybrid epithelial …

A network-biology perspective of microRNA function and dysfunction in cancer

CP Bracken, HS Scott, GJ Goodall - Nature Reviews Genetics, 2016 - nature.com
MicroRNAs (miRNAs) participate in most aspects of cellular differentiation and homeostasis,
and consequently have roles in many pathologies, including cancer. These small non …

A functional perspective on phenotypic heterogeneity in microorganisms

M Ackermann - Nature Reviews Microbiology, 2015 - nature.com
Most microbial communities consist of a genetically diverse assembly of different organisms,
and the level of genetic diversity plays an important part in community properties and …

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

DA Jaitin, E Kenigsberg, H Keren-Shaul, N Elefant… - Science, 2014 - science.org
In multicellular organisms, biological function emerges when heterogeneous cell types form
complex organs. Nevertheless, dissection of tissues into mixtures of cellular subpopulations …

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

AP Patel, I Tirosh, JJ Trombetta, AK Shalek… - Science, 2014 - science.org
Human cancers are complex ecosystems composed of cells with distinct phenotypes,
genotypes, and epigenetic states, but current models do not adequately reflect tumor …

Environmental fluctuations and their effects on microbial communities, populations and individuals

J Nguyen, J Lara-Gutiérrez… - FEMS microbiology …, 2021 - academic.oup.com
From the homeostasis of human health to the cycling of Earth's elements, microbial activities
underlie environmental, medical and industrial processes. These activities occur in chemical …

[HTML][HTML] Roles for microRNAs in conferring robustness to biological processes

MS Ebert, PA Sharp - Cell, 2012 - cell.com
Biological systems use a variety of mechanisms to maintain their functions in the face of
environmental and genetic perturbations. Increasing evidence suggests that, among their …

Single-cell metabolomics: analytical and biological perspectives

R Zenobi - Science, 2013 - science.org
Background In recent years, there has been a surge in the development and application of
single-cell genomics, transcriptomics, proteomics, and metabolomics. The metabolome is …

The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil

M Ebadi, Q Bafort, E Mizrachi… - Proceedings of the …, 2023 - National Acad Sciences
The importance of whole-genome duplication (WGD) for evolution is controversial. Whereas
some view WGD mainly as detrimental and an evolutionary dead end, there is growing …

[HTML][HTML] Antithetic integral feedback ensures robust perfect adaptation in noisy biomolecular networks

C Briat, A Gupta, M Khammash - Cell systems, 2016 - cell.com
The ability to adapt to stimuli is a defining feature of many biological systems and critical to
maintaining homeostasis. While it is well appreciated that negative feedback can be used to …