[HTML][HTML] Förster resonance energy transfer–A spectroscopic nanoruler: Principle and applications

H Sahoo - Journal of Photochemistry and Photobiology C …, 2011 - Elsevier
Förster resonance energy transfer (FRET) in association with the recent advancements in
optical techniques provides a way to understand the detailed mechanisms in different …

Protein folding studied by single-molecule FRET

B Schuler, WA Eaton - Current opinion in structural biology, 2008 - Elsevier
A complete understanding of a protein-folding mechanism requires description of the
distribution of microscopic pathways that connect the folded and unfolded states. This …

Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements

G Fuertes, N Banterle, KM Ruff… - Proceedings of the …, 2017 - National Acad Sciences
Unfolded states of proteins and native states of intrinsically disordered proteins (IDPs)
populate heterogeneous conformational ensembles in solution. The average sizes of these …

Role of solvation effects in protein denaturation: from thermodynamics to single molecules and back

JL England, G Haran - Annual review of physical chemistry, 2011 - annualreviews.org
Protein stability often is studied in vitro through the use of urea and guanidinium chloride,
chemical cosolvents that disrupt protein native structure. Much controversy still surrounds …

Heterogeneity in protein folding and unfolding reactions

S Bhatia, JB Udgaonkar - Chemical Reviews, 2022 - ACS Publications
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

E Lerner, A Barth, J Hendrix, B Ambrose, V Birkedal… - Elife, 2021 - elifesciences.org
Single-molecule FRET (smFRET) has become a mainstream technique for studying
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …

Single-molecule studies of protein folding

A Borgia, PM Williams, J Clarke - Annu. Rev. Biochem., 2008 - annualreviews.org
Although protein-folding studies began several decades ago, it is only recently that the tools
to analyze protein folding at the single-molecule level have been developed. Advances in …

Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories

HS Chung, JM Louis, WA Eaton - Proceedings of the …, 2009 - National Acad Sciences
Transition paths are a uniquely single-molecule property not yet observed for any molecular
process in solution. The duration of transition paths is the tiny fraction of the time in an …

Single-molecule spectroscopy of the temperature-induced collapse of unfolded proteins

D Nettels, S Müller-Späth, F Küster… - Proceedings of the …, 2009 - National Acad Sciences
We used single-molecule FRET in combination with other biophysical methods and
molecular simulations to investigate the effect of temperature on the dimensions of unfolded …

Probing the action of chemical denaturant on an intrinsically disordered protein by simulation and experiment

W Zheng, A Borgia, K Buholzer… - Journal of the …, 2016 - ACS Publications
Chemical denaturants are the most commonly used agents for unfolding proteins and are
thought to act by better solvating the unfolded state. Improved solvation is expected to lead …