An overview of BioCreative II. 5

F Leitner, SA Mardis, M Krallinger… - IEEE/ACM …, 2010 - ieeexplore.ieee.org
We present the results of the BioCreative II. 5 evaluation in association with the FEBS Letters
experiment, where authors created Structured Digital Abstracts to capture information about …

ChemicalTagger: A tool for semantic text-mining in chemistry

L Hawizy, DM Jessop, N Adams… - Journal of …, 2011 - Springer
Background The primary method for scientific communication is in the form of published
scientific articles and theses which use natural language combined with domain-specific …

BioLemmatizer: a lemmatization tool for morphological processing of biomedical text

H Liu, T Christiansen, WA Baumgartner… - Journal of biomedical …, 2012 - Springer
Background The wide variety of morphological variants of domain-specific technical terms
contributes to the complexity of performing natural language processing of the scientific …

Identification of research hypotheses and new knowledge from scientific literature

M Shardlow, R Batista-Navarro, P Thompson… - BMC medical informatics …, 2018 - Springer
Background Text mining (TM) methods have been used extensively to extract relations and
events from the literature. In addition, TM techniques have been used to extract various …

Speculation and negation: Rules, rankers, and the role of syntax

E Velldal, L Øvrelid, J Read, S Oepen - Computational linguistics, 2012 - direct.mit.edu
This article explores a combination of deep and shallow approaches to the problem of
resolving the scope of speculation and negation within a sentence, specifically in the …

Natural language processing and computational linguistics

J Tsujii - Computational Linguistics, 2021 - direct.mit.edu
As an engineering field, research on natural language processing (NLP) is much more
constrained by currently available resources and technologies, compared with theoretical …

From free‐text electronic health records to structured cohorts: Onconum, an innovative methodology for real‐world data mining in breast cancer

A Simoulin, N Thiebaut, K Neuberger… - Computer Methods and …, 2023 - Elsevier
Purpose A considerable amount of valuable information is present in electronic health
records (EHRs) however it remains inaccessible because it is embedded into unstructured …

Using text mining techniques to extract phenotypic information from the PhenoCHF corpus

N Alnazzawi, P Thompson, R Batista-Navarro… - BMC medical informatics …, 2015 - Springer
Background Phenotypic information locked away in unstructured narrative text presents
significant barriers to information accessibility, both for clinical practitioners and for …

[PDF][PDF] Method mention extraction from scientific research papers

H Houngbo, RE Mercer - Proceedings of COLING 2012, 2012 - aclanthology.org
Scientific publications contain many references to method terminologies used during
scientific experiments. New terms are constantly created within the research community …

[PDF][PDF] Evaluating dependency representations for event extraction

M Miwa, S Pyysalo, T Hara, J Tsujii - Proceedings of the 23rd …, 2010 - aclanthology.org
The detailed analyses of sentence structure provided by parsers have been applied to
address several information extraction tasks. In a recent bio-molecular event extraction task …