Scalable molecular dynamics with NAMD

JC Phillips, R Braun, W Wang… - Journal of …, 2005 - Wiley Online Library
NAMD is a parallel molecular dynamics code designed for high‐performance simulation of
large biomolecular systems. NAMD scales to hundreds of processors on high‐end parallel …

[图书][B] Parallel science and engineering applications: The Charm++ approach

LV Kale, A Bhatele - 2016 - books.google.com
This book highlights the use of Charm++ in a wide variety of scientific and engineering
fields. It emphasizes the adaptivity, asynchrony, and message-driven execution of Charm++ …

Extremal optimization applied to load balancing in execution of distributed programs

I De Falco, E Laskowski, R Olejnik, U Scafuri… - Applied Soft …, 2015 - Elsevier
The paper describes methods for using Extremal Optimization (EO) for processor load
balancing during execution of distributed applications. A load balancing algorithm for …

Partitioning and dynamic load balancing for the numerical solution of partial differential equations

JD Teresco, KD Devine, JE Flaherty - Numerical solution of partial …, 2006 - Springer
In parallel simulations, partitioning and load-balancing algorithms compute the distribution
of application data and work to processors. The effectiveness of this distribution greatly …

Experience with distributed memory delaunay-based image-to-mesh conversion implementation

P Thomadakis, N Chrisochoides - arXiv preprint arXiv:2308.12525, 2023 - arxiv.org
This paper presents some of our findings on the scalability of parallel 3D mesh generation
on distributed memory machines. The primary objective of this study was to evaluate a …

Practical and efficient point insertion scheduling method for parallel guaranteed quality Delaunay refinement

AN Chernikov, NP Chrisochoides - Proceedings of the 18th annual …, 2004 - dl.acm.org
We describe a parallel scheduler, for guaranteed quality parallel mesh generation and
refinement methods. We prove a sufficient condition for the new points to be independent …

A novel dynamic load balancing library for cluster computing

M Balasubramaniam, K Barker… - … on parallel and …, 2004 - ieeexplore.ieee.org
In the last few years, research advances in dynamic scheduling at application and runtime
system levels have contributed to improving the performance of scientific applications in …

Charisma: Orchestrating migratable parallel objects

C Huang, L Kalé - Proceedings of the 16th international symposium on …, 2007 - dl.acm.org
The parallel programming paradigm based on migratable objects, as embodied in Charm++,
improves programmer productivity by automating resource management. The programmer …

Towards exascale parallel delaunay mesh generation

N Chrisochoides, A Chernikov, A Fedorov, A Kot… - Proceedings of the 18th …, 2009 - Springer
Mesh generation is a critical component for many (bio-) engineering applications. However,
parallel mesh generation codes, which are essential for these applications to take the fullest …

Machine-learning-based load balancing for Community Ice CodE component in CESM

P Balaprakash, Y Alexeev, SA Mickelson… - … Science--VECPAR 2014 …, 2015 - Springer
Load balancing scientific codes on massively parallel architectures is becoming an
increasingly challenging task. In this paper, we focus on the Community Earth System …