When the levee breaks: a practical guide to sketching algorithms for processing the flood of genomic data

WPM Rowe - Genome biology, 2019 - Springer
Considerable advances in genomics over the past decade have resulted in vast amounts of
data being generated and deposited in global archives. The growth of these archives …

Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash

MR Hera, NT Pierce-Ward, D Koslicki - Genome research, 2023 - genome.cshlp.org
Sketching methods offer computational biologists scalable techniques to analyze data sets
that continue to grow in size. MinHash is one such technique to estimate set similarity that …

Debiasing fracminhash and deriving confidence intervals for mutation rates across a wide range of evolutionary distances

MR Hera, T Pierce, D Koslicki - bioRxiv, 2022 - biorxiv.org
Sketching methods offer computational biologists scalable techniques to analyze data sets
that continue to grow in size. MinHash is one such technique to estimate set similarity that …

IoT based detection of molded bread and expiry prediction using machine learning techniques

MS Akhtar, T Feng - EAI Endorsed Transactions on Creative Technologies, 2022 - eudl.eu
Expiration of a bread is a very popular issue in food logistics. Due to various conditions
fungal bread can cause food poisoning for consumers. As a result, nausea, diarrhea and …

Pakman: Scalable assembly of large genomes on distributed memory machines

P Ghosh, S Krishnamoorthy… - 2019 IEEE International …, 2019 - ieeexplore.ieee.org
De novo genome assembly is a fundamental problem in the field of bioinformatics, that aims
to assemble the DNA sequence of an unknown genome from numerous short DNA …

Genome Assembly: A Review

A Kumar, V Verma - 2021 7th International Conference on …, 2021 - ieeexplore.ieee.org
Genome is complete set of DNA, including all of its genes. After getting reads from
sequencing technologies, it's a huge task to reconstruct the original genome because there …

[PDF][PDF] Space-efficient representation of de Bruijn graphs for data streams

AS de Queiroz - 2022 - cin.ufpe.br
Background Since the introduction of the second generation of DNA sequencing
technologies, improving assembly efficiency has become critical to match the high …

A Classification of de Bruijn Graph Approaches for De Novo Fragment Assembly

EM de Armas, M Holanda, D de Oliveira… - Brazilian Symposium on …, 2020 - Springer
Research in bioinformatics has changed rapidly since the advent of next-generation
sequencing (NGS). Despite the positive impact on cost reduction, assembling the generated …

[PDF][PDF] Prof. Marcus Vinicius Soledade Poggi de Aragao

EH Haeusler - 2019 - maxwell.vrac.puc-rio.br
First of all, I am really grateful for my family and friends. I am especially grateful to my mother,
my father and my husband, who have always been supporting all the decisions in my life …

[图书][B] Scalable Methods for Genome Assembly

P Ghosh - 2019 - search.proquest.com
De novo genome assembly is a fundamental problem in the field of computational biology.
The goal is to reconstruct an unknown genome from short DNA fragments (called “reads”) …