Genome sequencing and population genomics in non-model organisms

H Ellegren - Trends in ecology & evolution, 2014 - cell.com
High-throughput sequencing technologies are revolutionizing the life sciences. The past 12
months have seen a burst of genome sequences from non-model organisms, in each case …

Genomic signatures of selection at linked sites: unifying the disparity among species

AD Cutter, BA Payseur - Nature Reviews Genetics, 2013 - nature.com
Population genetics theory supplies powerful predictions about how natural selection
interacts with genetic linkage to sculpt the genomic landscape of nucleotide polymorphism …

Mutation bias reflects natural selection in Arabidopsis thaliana

JG Monroe, T Srikant, P Carbonell-Bejerano, C Becker… - Nature, 2022 - nature.com
Since the first half of the twentieth century, evolutionary theory has been dominated by the
idea that mutations occur randomly with respect to their consequences. Here we test this …

The inflated significance of neutral genetic diversity in conservation genetics

JC Teixeira, CD Huber - Proceedings of the National …, 2021 - National Acad Sciences
The current rate of species extinction is rapidly approaching unprecedented highs, and life
on Earth presently faces a sixth mass extinction event driven by anthropogenic activity …

Whole-genome sequencing of multiple Arabidopsis thaliana populations

J Cao, K Schneeberger, S Ossowski, T Günther… - Nature …, 2011 - nature.com
The plant Arabidopsis thaliana occurs naturally in many different habitats throughout
Eurasia. As a foundation for identifying genetic variation contributing to adaptation to diverse …

Revisiting an old riddle: what determines genetic diversity levels within species?

EM Leffler, K Bullaughey, DR Matute, WK Meyer… - 2012 - journals.plos.org
Understanding why some species have more genetic diversity than others is central to the
study of ecology and evolution, and carries potentially important implications for …

Crop genomics: advances and applications

PL Morrell, ES Buckler, J Ross-Ibarra - Nature Reviews Genetics, 2012 - nature.com
The completion of reference genome sequences for many important crops and the ability to
perform high-throughput resequencing are providing opportunities for improving our …

Natural selection constrains neutral diversity across a wide range of species

RB Corbett-Detig, DL Hartl, TB Sackton - PLoS biology, 2015 - journals.plos.org
The neutral theory of molecular evolution predicts that the amount of neutral polymorphisms
within a species will increase proportionally with the census population size (Nc). However …

Contrasting rates of molecular evolution and patterns of selection among gymnosperms and flowering plants

AR De La Torre, Z Li, Y Van de Peer… - … biology and evolution, 2017 - academic.oup.com
The majority of variation in rates of molecular evolution among seed plants remains both
unexplored and unexplained. Although some attention has been given to flowering plants …

The effects of deleterious mutations on evolution at linked sites

B Charlesworth - Genetics, 2012 - academic.oup.com
The process of evolution at a given site in the genome can be influenced by the action of
selection at other sites, especially when these are closely linked to it. Such selection …