Single-molecule studies of RNA polymerase: motoring along

KM Herbert, WJ Greenleaf, SM Block - Annu. Rev. Biochem., 2008 - annualreviews.org
Single-molecule techniques have advanced our understanding of transcription by RNA
polymerase (RNAP). A new arsenal of approaches, including single-molecule fluorescence …

Single-molecule analysis of RNA polymerase transcription

L Bai, TJ Santangelo, MD Wang - Annu. Rev. Biophys. Biomol …, 2006 - annualreviews.org
The kinetics and mechanisms of transcription are now being investigated by a repertoire of
single-molecule techniques, including optical and magnetic tweezers, high-sensitivity …

Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy

N Crampton, WA Bonass, J Kirkham… - Nucleic acids …, 2006 - academic.oup.com
Atomic force microscopy (AFM) has been used to image, at single molecule resolution,
transcription events by Escherichia coli RNA polymerase (RNAP) on a linear DNA template …

Studying protein-DNA interactions using atomic force microscopy

EC Beckwitt, M Kong, B Van Houten - Seminars in cell & developmental …, 2018 - Elsevier
Atomic force microscopy (AFM) has made significant contributions to the study of protein-
DNA interactions by making it possible to topographically image biological samples. A …

Transcriptional bursting is intrinsically caused by interplay between RNA polymerases on DNA

K Fujita, M Iwaki, T Yanagida - Nature communications, 2016 - nature.com
Cell-to-cell variability plays a critical role in cellular responses and decision-making in a
population, and transcriptional bursting has been broadly studied by experimental and …

Atomic force microscopy imaging and pulling of nucleic acids

HG Hansma, K Kasuya, E Oroudjev - Current opinion in structural biology, 2004 - Elsevier
Recent advances in atomic force microscopy (AFM) imaging of nucleic acids include the
visualization of DNA and RNA incorporated into devices and patterns, and into structures …

Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences

TJ Santangelo, JN Reeve - Journal of molecular biology, 2006 - Elsevier
Archaea are prokaryotes with a single DNA-dependent RNA polymerase (RNAP) that is
homologous to, and likely resembles the ancestor of all three eukaryotic RNAPs. In vitro …

Transcription reinitiation by RNA polymerase III

G Dieci, MC Bosio, B Fermi, R Ferrari - Biochimica et Biophysica Acta (BBA) …, 2013 - Elsevier
The retention of transcription proteins at an actively transcribed gene contributes to
maintenance of the active transcriptional state and increases the rate of subsequent …

Distinct roles of transcription factors TFIIIB and TFIIIC in RNA polymerase III transcription reinitiation

R Ferrari, C Rivetti, J Acker… - Proceedings of the …, 2004 - National Acad Sciences
Eukaryotic RNA polymerase (Pol) III is recruited to target promoters by a stable preinitiation
complex containing transcription factors TFIIIC and TFIIIB. After the first transcription cycle …

Detours and shortcuts to transcription reinitiation

G Dieci, A Sentenac - Trends in biochemical sciences, 2003 - cell.com
Gene transcription is repetitive, enabling the synthesis of multiple copies of identical RNA
molecules from the same template. The cyclic process of RNA synthesis from active genes …