The genomics of auditory function and disease

S Taiber, K Gwilliam, R Hertzano… - Annual review of …, 2022 - annualreviews.org
Current estimates suggest that nearly half a billion people worldwide are affected by hearing
loss. Because of the major psychological, social, economic, and health ramifications …

Transcription factor reprogramming in the inner ear: turning on cell fate switches to regenerate sensory hair cells

AA Iyer, AK Groves - Frontiers in cellular neuroscience, 2021 - frontiersin.org
Non-mammalian vertebrates can restore their auditory and vestibular hair cells naturally by
triggering the regeneration of adjacent supporting cells. The transcription factor ATOH1 is a …

Computational methods for the prediction of chromatin interaction and organization using sequence and epigenomic profiles

H Tao, H Li, K Xu, H Hong, S Jiang, G Du… - Briefings in …, 2021 - academic.oup.com
The exploration of three-dimensional chromatin interaction and organization provides
insight into mechanisms underlying gene regulation, cell differentiation and disease …

Recall DNA methylation levels at low coverage sites using a CNN model in WGBS

X Luo, Y Wang, Q Zou, L Xu - PLOS Computational Biology, 2023 - journals.plos.org
DNA methylation is an important regulator of gene transcription. WGBS is the gold-standard
approach for base-pair resolution quantitative of DNA methylation. It requires high …

DNA methylation signature in mononuclear cells and proinflammatory cytokines may define molecular subtypes in sporadic Meniere disease

M Flook, A Escalera-Balsera, A Gallego-Martinez… - Biomedicines, 2021 - mdpi.com
Meniere Disease (MD) is a multifactorial disorder of the inner ear characterized by vertigo
attacks associated with sensorineural hearing loss and tinnitus with a significant heritability …

The noncoding genome and hearing loss

KB Avraham, L Khalaily, Y Noy, L Kamal, T Koffler-Brill… - Human genetics, 2022 - Springer
The age of sequencing has provided unprecedented insights into the human genome. The
coding region of the genome comprises nearly 20,000 genes, of which approximately 4000 …

Scrutinizing pathogenicity of the USH2A c.2276 G > T; p.(Cys759Phe) variant

J Reurink, E De Vrieze, CHZ Li, E van Berkel… - NPJ Genomic …, 2022 - nature.com
The USH2A variant c. 2276 G> T (p.(Cys759Phe)) has been described by many authors as a
frequent cause of autosomal recessive retinitis pigmentosa (arRP). However, this is in …

Changes in DNA methylation hallmark alterations in chromatin accessibility and gene expression for eye lens differentiation

J Disatham, L Brennan, X Jiao, Z Ma… - Epigenetics & …, 2022 - Springer
Background Methylation at cytosines (mCG) is a well-known regulator of gene expression,
but its requirements for cellular differentiation have yet to be fully elucidated. A well-studied …

Effects of DNA methylation on TFs in human embryonic stem cells

X Luo, T Zhang, Y Zhai, F Wang, S Zhang… - Frontiers in genetics, 2021 - frontiersin.org
DNA methylation is an important epigenetic mechanism for gene regulation. The
conventional view of DNA methylation is that DNA methylation could disrupt protein-DNA …

[HTML][HTML] Comparative genomics analysis of Acinetobacter haemolyticus isolates from sputum samples of respiratory patients

L Bai, SC Zhang, Y Deng, CC Song, GB Kang, Y Dong… - Genomics, 2020 - Elsevier
Acinetobacter haemolyticus (A. haemolyticus) is a significant Acinetobacter pathogen, and
the resistance of A. haemolyticus continues to rise due to abuse of antibiotics and the …