Graph representation learning in biomedicine and healthcare

MM Li, K Huang, M Zitnik - Nature Biomedical Engineering, 2022 - nature.com
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …

Deep learning with graph convolutional networks: An overview and latest applications in computational intelligence

UA Bhatti, H Tang, G Wu, S Marjan… - International Journal of …, 2023 - Wiley Online Library
Convolutional neural networks (CNNs) have received widespread attention due to their
powerful modeling capabilities and have been successfully applied in natural language …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

How attentive are graph attention networks?

S Brody, U Alon, E Yahav - arXiv preprint arXiv:2105.14491, 2021 - arxiv.org
Graph Attention Networks (GATs) are one of the most popular GNN architectures and are
considered as the state-of-the-art architecture for representation learning with graphs. In …

A comprehensive survey on community detection with deep learning

X Su, S Xue, F Liu, J Wu, J Yang, C Zhou… - … on Neural Networks …, 2022 - ieeexplore.ieee.org
Detecting a community in a network is a matter of discerning the distinct features and
connections of a group of members that are different from those in other communities. The …

A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

Graph neural networks for natural language processing: A survey

L Wu, Y Chen, K Shen, X Guo, H Gao… - … and Trends® in …, 2023 - nowpublishers.com
Deep learning has become the dominant approach in addressing various tasks in Natural
Language Processing (NLP). Although text inputs are typically represented as a sequence …

Graphgpt: Graph instruction tuning for large language models

J Tang, Y Yang, W Wei, L Shi, L Su, S Cheng… - Proceedings of the 47th …, 2024 - dl.acm.org
Graph Neural Networks (GNNs) have evolved to understand graph structures through
recursive exchanges and aggregations among nodes. To enhance robustness, self …

Self-supervised heterogeneous graph neural network with co-contrastive learning

X Wang, N Liu, H Han, C Shi - Proceedings of the 27th ACM SIGKDD …, 2021 - dl.acm.org
Heterogeneous graph neural networks (HGNNs) as an emerging technique have shown
superior capacity of dealing with heterogeneous information network (HIN). However, most …

On explainability of graph neural networks via subgraph explorations

H Yuan, H Yu, J Wang, K Li, S Ji - … conference on machine …, 2021 - proceedings.mlr.press
We consider the problem of explaining the predictions of graph neural networks (GNNs),
which otherwise are considered as black boxes. Existing methods invariably focus on …