mRNAs, proteins and the emerging principles of gene expression control

C Buccitelli, M Selbach - Nature Reviews Genetics, 2020 - nature.com
Gene expression involves transcription, translation and the turnover of mRNAs and proteins.
The degree to which protein abundances scale with mRNA levels and the implications in …

Systems biology of cancer metastasis

Y Suhail, MP Cain, K Vanaja, PA Kurywchak… - Cell systems, 2019 - cell.com
Cancer metastasis is no longer viewed as a linear cascade of events but rather as a series
of concurrent, partially overlapping processes, as successfully metastasizing cells assume …

Ribosome profiling: global views of translation

NT Ingolia, JA Hussmann… - Cold Spring Harbor …, 2019 - cshperspectives.cshlp.org
The translation of messenger RNA (mRNA) into protein and the folding of the resulting
protein into an active form are prerequisites for virtually every cellular process and represent …

Heterogeneity and specialized functions of translation machinery: from genes to organisms

NR Genuth, M Barna - Nature Reviews Genetics, 2018 - nature.com
Regulation of mRNA translation offers the opportunity to diversify the expression and
abundance of proteins made from individual gene products in cells, tissues and organisms …

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates

A Riba, N Di Nanni, N Mittal, E Arhné… - Proceedings of the …, 2019 - National Acad Sciences
Although protein synthesis dynamics has been studied both with theoretical models and by
profiling ribosome footprints, the determinants of ribosome flux along open reading frames …

Proteome turnover in the spotlight: approaches, applications, and perspectives

AB Ross, JD Langer, M Jovanovic - Molecular & Cellular Proteomics, 2021 - ASBMB
In all cells, proteins are continuously synthesized and degraded to maintain protein
homeostasis and modify gene expression levels in response to stimuli. Collectively, the …

Translational control through ribosome heterogeneity and functional specialization

DM Gay, AH Lund, MD Jansson - Trends in biochemical sciences, 2022 - cell.com
The conceptual origins of ribosome specialization can be traced back to the earliest days of
molecular biology. Yet, this field has only recently begun to gather momentum, with …

Understanding extracellular vesicle diversity–current status

DW Greening, RJ Simpson - Expert review of proteomics, 2018 - Taylor & Francis
ABSTRACT Introduction: Extracellular vesicles (EVs) represent an important mode of
intercellular communication. There is now a growing awareness that predominant EV …

Protein lipoylation: an evolutionarily conserved metabolic regulator of health and disease

EA Rowland, CK Snowden, IM Cristea - Current opinion in chemical …, 2018 - Elsevier
Highlights•Lipoylation is a rare, but highly conserved lysine posttranslational modification.•
Lipoylated metabolic complexes are evolutionarily conserved from bacteria to humans.• …

Beyond read-counts: Ribo-seq data analysis to understand the functions of the transcriptome

L Calviello, U Ohler - Trends in Genetics, 2017 - cell.com
By mapping the positions of millions of translating ribosomes in the cell, ribosome profiling
(Ribo-seq) has established its role as a powerful tool to study gene expression. Several …