Mass spectrometry methods for measuring protein stability

DD Vallejo, C Rojas Ramírez, KF Parson, Y Han… - Chemical …, 2022 - ACS Publications
Mass spectrometry is a central technology in the life sciences, providing our most
comprehensive account of the molecular inventory of the cell. In parallel with developments …

Mobile and localized protons: a framework for understanding peptide dissociation

VH Wysocki, G Tsaprailis, LL Smith… - Journal of Mass …, 2000 - Wiley Online Library
Protein identification and peptide sequencing by tandem mass spectrometry requires
knowledge of how peptides fragment in the gas phase, specifically which bonds are broken …

An integrated native mass spectrometry and top-down proteomics method that connects sequence to structure and function of macromolecular complexes

H Li, HH Nguyen, RR Ogorzalek Loo… - Nature …, 2018 - nature.com
Mass spectrometry (MS) has become a crucial technique for the analysis of protein
complexes. Native MS has traditionally examined protein subunit arrangements, while …

Collision‐induced dissociation (CID) of peptides and proteins

JM Wells, SA McLuckey - Methods in enzymology, 2005 - Elsevier
The most commonly used activation method in the tandem mass spectrometry (MS) of
peptides and proteins is energetic collisions with a neutral target gas. The overall process of …

Tandem mass spectrometry: dissociation of ions by collisional activation

AK Shukla, JH Futrell - Journal of mass spectrometry, 2000 - Wiley Online Library
This review presents a brief historical introduction to the development of tandem mass
spectrometry and its principal applications. It is placed in the context of the general …

Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra

LA Breci, DL Tabb, JR Yates, VH Wysocki - Analytical chemistry, 2003 - ACS Publications
Fragmentation at the Xxx-Pro bond was analyzed for a group of peptide mass spectra that
were acquired in a Finnigan ion trap mass spectrometer and were generated from proteins …

Prediction of low-energy collision-induced dissociation spectra of peptides

Z Zhang - Analytical chemistry, 2004 - ACS Publications
A kinetic model, based on the “mobile proton” model of peptide fragmentation, was
developed to quantitatively simulate the low-energy collision-induced dissociation (CID) …

Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation

EA Kapp, F Schütz, GE Reid, JS Eddes… - Analytical …, 2003 - ACS Publications
A database of 5500 unique peptide tandem mass spectra acquired in an ion trap mass
spectrometer was assembled for peptides derived from proteins digested with trypsin …

Angiotensin I–converting enzyme inhibitory activity of peptides derived from egg white proteins by enzymatic hydrolysis

M Miguel, I Recio, JA Gómez-Ruiz, M Ramos… - Journal of food …, 2004 - Elsevier
The hydrolysis of crude egg white with pepsin, trypsin, and chymotrypsin produced peptides
with angiotensin-converting enzyme (ACE) inhibitory properties. These peptides were …

Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns

Y Huang, JM Triscari, GC Tseng, L Pasa-Tolic… - Analytical …, 2005 - ACS Publications
Data mining was performed on 28 330 unique peptide tandem mass spectra for which
sequences were assigned with high confidence. By dividing the spectra into different sets …