hCoCena: horizontal integration and analysis of transcriptomics datasets

M Oestreich, L Holsten, S Agrawal, K Dahm… - …, 2022 - academic.oup.com
Motivation Transcriptome-based gene co-expression analysis has become a standard
procedure for structured and contextualized understanding and comparison of different …

PulmonDB: a curated lung disease gene expression database

AB Villaseñor-Altamirano, M Moretto, M Maldonado… - Scientific reports, 2020 - nature.com
Abstract Chronic Obstructive Pulmonary Disease (COPD) and Idiopathic Pulmonary Fibrosis
(IPF) have contrasting clinical and pathological characteristics and interesting whole …

Open data for differential network analysis in glioma

C Jean-Quartier, F Jeanquartier… - International Journal of …, 2020 - mdpi.com
The complexity of cancer diseases demands bioinformatic techniques and translational
research based on big data and personalized medicine. Open data enables researchers to …

A COMPASS for VESPUCCI: a FAIR way to explore the grapevine transcriptomic landscape

M Moretto, P Sonego, S Pilati, JT Matus… - Frontiers in Plant …, 2022 - frontiersin.org
Successfully integrating transcriptomic experiments is a challenging task with the ultimate
goal of analyzing gene expression data in the broader context of all available …

HpeNet: Co-expression Network Database for de novo Transcriptome Assembly of Paeonia lactiflora Pall

M Sheng, J She, W Xu, Y Hong, Z Su, X Zhang - Frontiers in Genetics, 2020 - frontiersin.org
The herbaceous peony (Paeonia lactiflora Pall.) is a well-known ornamental flowering and
pharmaceutical plant found in China. Its high medicinal value has long been recognized by …

Status and prospects of systems biology in grapevine research

JT Matus, V Ruggieri, FJ Romero, M Moretto… - The Grape …, 2019 - Springer
The cultivated grapevine, Vitis vinifera L., has gathered a vast amount of omics data
throughout the last two decades, driving the imperative use of computational resources for …

[PDF][PDF] Cancer Immunotherapy: Fundamentals, State-of-the-Art, and Future Directions

D Finaev - researchgate.net
Cancer immunotherapy is undergoing rapid development. Numerous preclinical and clinical
trials are in progress. In general terms, immunotherapy includes non-specific stimulation of …

GEDI: an R package for integration of transcriptomic data from multiple high-throughput platforms

MN Stokholm, MB Rabaglino, HN Kadarmideen - bioRxiv, 2021 - biorxiv.org
Transcriptomic data is often expensive and difficult to generate in large cohorts in
comparison to genomic data and therefore is often important to integrate multiple …

Francisco José Romero, Marco Moretto and Darren CJ Wong

JT Matus, V Ruggieri - The Grape Genome, 2019 - Springer
The cultivated grapevine, Vitis vinifera L., has gathered a vast amount of omics data
throughout the last two decades, driving the imperative use of computational resources for …