Mechanisms of ribosome rescue in bacteria

KC Keiler - Nature Reviews Microbiology, 2015 - nature.com
Ribosomes that stall during translation need to be rescued to ensure that the protein
synthesis capacity of the cell is maintained. Stalling arises when ribosomes become trapped …

The hypusine-containing translation factor eIF5A

TE Dever, E Gutierrez, BS Shin - Critical reviews in biochemistry …, 2014 - Taylor & Francis
In addition to the small and large ribosomal subunits, aminoacyl-tRNAs, and an mRNA,
cellular protein synthesis is dependent on translation factors. The eukaryotic translation …

eIF5A promotes translation of polyproline motifs

E Gutierrez, BS Shin, CJ Woolstenhulme, JR Kim… - Molecular cell, 2013 - cell.com
Translation factor eIF5A, containing the unique amino acid hypusine, was originally shown
to stimulate Met-puromycin synthesis, a model assay for peptide bond formation. More …

EF-P is essential for rapid synthesis of proteins containing consecutive proline residues

LK Doerfel, I Wohlgemuth, C Kothe, F Peske, H Urlaub… - Science, 2013 - science.org
Elongation factor P (EF-P) is a translation factor of unknown function that has been
implicated in a great variety of cellular processes. Here, we show that EF-P prevents …

Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches

S Ude, J Lassak, AL Starosta, T Kraxenberger… - Science, 2013 - science.org
Translation elongation factor P (EF-P) is critical for virulence in bacteria. EF-P is present in
all bacteria and orthologous to archaeal and eukaryotic initiation factor 5A, yet the biological …

Proteobacteria explain significant functional variability in the human gut microbiome

PH Bradley, KS Pollard - Microbiome, 2017 - Springer
Background While human gut microbiomes vary significantly in taxonomic composition,
biological pathway abundance is surprisingly invariable across hosts. We hypothesized that …

Ribosomal incorporation of consecutive β-amino acids

T Katoh, H Suga - Journal of the American Chemical Society, 2018 - ACS Publications
Due to their unique characteristics, which are not shared by canonical α-peptides, peptides
that contain stretches of consecutive β-amino acids are attractive scaffolds for novel peptide …

Polyspecific pyrrolysyl-tRNA synthetases from directed evolution

LT Guo, YS Wang, A Nakamura… - Proceedings of the …, 2014 - National Acad Sciences
Pyrrolysyl-tRNA synthetase (PylRS) and its cognate tRNAPyl have emerged as ideal
translation components for genetic code innovation. Variants of the enzyme facilitate the …

Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes

H Grosjean, M Breton, P Sirand-Pugnet, F Tardy… - PLoS …, 2014 - journals.plos.org
Mollicutes is a class of parasitic bacteria that have evolved from a common Firmicutes
ancestor mostly by massive genome reduction. With genomes under 1 Mbp in size, most …

Entropic contribution of elongation factor P to proline positioning at the catalytic center of the ribosome

LK Doerfel, I Wohlgemuth, V Kubyshkin… - Journal of the …, 2015 - ACS Publications
The peptide bond formation with the amino acid proline (Pro) on the ribosome is slow,
resulting in translational stalling when several Pro have to be incorporated into the peptide …