Noise in biomolecular systems: Modeling, analysis, and control implications

C Briat, M Khammash - Annual Review of Control, Robotics, and …, 2023 - annualreviews.org
While noise is generally associated with uncertainties and often has a negative connotation
in engineering, living organisms have evolved to adapt to (and even exploit) such …

Solving Stochastic Reaction Networks with Maximum Entropy Lagrange Multipliers

M Vlysidis, YN Kaznessis - Entropy, 2018 - mdpi.com
The time evolution of stochastic reaction networks can be modeled with the chemical master
equation of the probability distribution. Alternatively, the numerical problem can be …

ZICS: an application for calculating the stationary probability distribution of stochastic reaction networks

M Vlysidis, AC Schiek, YN Kaznessis - arXiv preprint arXiv:1806.06428, 2018 - arxiv.org
Stochastic formalisms are necessary to describe the behavior of many biological systems.
However, there remains a lack of numerical methods available to calculate the stationary …