Microbiological insights into anaerobic digestion for biogas, hydrogen or volatile fatty acids (VFAs): a review

S Harirchi, S Wainaina, T Sar, SA Nojoumi… - …, 2022 - Taylor & Francis
In the past decades, considerable attention has been directed toward anaerobic digestion
(AD), which is an effective biological process for converting diverse organic wastes into …

Innovations to culturing the uncultured microbial majority

WH Lewis, G Tahon, P Geesink, DZ Sousa… - Nature Reviews …, 2021 - nature.com
Despite the surge of microbial genome data, experimental testing is important to confirm
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …

A standardized archaeal taxonomy for the Genome Taxonomy Database

C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil… - Nature …, 2021 - nature.com
The accrual of genomic data from both cultured and uncultured microorganisms provides
new opportunities to develop systematic taxonomies based on evolutionary relationships …

[HTML][HTML] Biomass in biogas production: Pretreatment and codigestion

A Kasinath, S Fudala-Ksiazek, M Szopinska… - … and Sustainable Energy …, 2021 - Elsevier
Globally, there is increasing awareness that the implementation of 'waste to
energy'technology is one of the best means to achieve sustainable energy development …

Diversity, ecology and evolution of Archaea

BJ Baker, V De Anda, KW Seitz, N Dombrowski… - Nature …, 2020 - nature.com
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …

Global homogenization of the structure and function in the soil microbiome of urban greenspaces

M Delgado-Baquerizo, DJ Eldridge, YR Liu… - Science …, 2021 - science.org
The structure and function of the soil microbiome of urban greenspaces remain largely
undetermined. We conducted a global field survey in urban greenspaces and neighboring …

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

DH Parks, C Rinke, M Chuvochina, PA Chaumeil… - Nature …, 2017 - nature.com
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently
available microbial genomes. This is being addressed by advances in sequencing …

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

RM Bowers, NC Kyrpides, R Stepanauskas… - Nature …, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …

An evolving view of methane metabolism in the Archaea

PN Evans, JA Boyd, AO Leu, BJ Woodcroft… - Nature Reviews …, 2019 - nature.com
Methane is a key compound in the global carbon cycle that influences both nutrient cycling
and the Earth's climate. A limited number of microorganisms control the flux of biologically …

Major new microbial groups expand diversity and alter our understanding of the tree of life

CJ Castelle, JF Banfield - Cell, 2018 - cell.com
The recent recovery of genomes for organisms from phyla with no isolated representative
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …