Bayesian inference of ancestral recombination graphs

A Mahmoudi, J Koskela, J Kelleher… - PLOS Computational …, 2022 - journals.plos.org
We present a novel algorithm, implemented in the software ARGinfer, for probabilistic
inference of the Ancestral Recombination Graph under the Coalescent with Recombination …

Automatic Zig-Zag sampling in practice

A Corbella, SEF Spencer, GO Roberts - Statistics and Computing, 2022 - Springer
Abstract Novel Monte Carlo methods to generate samples from a target distribution, such as
a posterior from a Bayesian analysis, have rapidly expanded in the past decade. Algorithms …

PDMP Monte Carlo methods for piecewise smooth densities

A Chevallier, S Power, AQ Wang… - Advances in Applied …, 2024 - cambridge.org
There has been substantial interest in developing Markov chain Monte Carlo algorithms
based on piecewise deterministic Markov processes. However, existing algorithms can only …

Lagged couplings diagnose Markov chain Monte Carlo phylogenetic inference

LJ Kelly, RJ Ryder, G Clarté - The Annals of Applied Statistics, 2023 - projecteuclid.org
Lagged couplings diagnose Markov chain Monte Carlo phylogenetic inference Page 1 The
Annals of Applied Statistics 2023, Vol. 17, No. 2, 1419–1443 https://doi.org/10.1214/22-AOAS1676 …

An Analysis of Elo Rating Systems via Markov Chains

S Olesker-Taylor, L Zanetti - arXiv preprint arXiv:2406.05869, 2024 - arxiv.org
We present a theoretical analysis of the Elo rating system, a popular method for ranking
skills of players in an online setting. In particular, we study Elo under the Bradley--Terry …

Дискретные пространственные структуры

ВЯ Цветков, ИП Дешко - Славянский форум, 2022 - elibrary.ru
Статья исследует дискретные пространственные структуры и их применение. Дается
краткая систематика дискретных структур. Показано, что они являются атрибутивным …

Bayesian inference of ancestral recombination graphs

JT Kelleher, A Mahmoudi, J Koskela… - PLOS Computational …, 2022 - ora.ox.ac.uk
We present a novel algorithm, implemented in the software ARGinfer, for probabilistic
inference of the Ancestral Recombination Graph under the Coalescent with Recombination …

Phylodynamic modelling to estimate the structure and evolutionary drivers of pathogen populations

D Helekal - 2023 - wrap.warwick.ac.uk
Pathogen populations are often highly structured, violating the common assumption of
homogeneity. The structure of pathogen population arises from a complex interplay of …

Phylogenetic Network Dissimilarity Measures That Take Branch Lengths Into Account

BA Yakici, HA Ogilvie, L Nakhleh - RECOMB International Workshop on …, 2022 - Springer
Dissimilarity measures for phylogenetic trees have long been used for analyzing inferred
trees and understanding the performance of phylogenetic methods. Given their importance …

DISCRETE STRUCTURES IN THE INFORMATION FIELD

RG BOLBAKOV - SLAVIC FORUM Учредители: Шайтура Сергей … - elibrary.ru
The article explores discrete structures in the information field. Discreteness is considered
as a property of systems, which makes it possible to divide the system into discrete …