The Allen Ancient DNA Resource (AADR) a curated compendium of ancient human genomes

S Mallick, A Micco, M Mah, H Ringbauer, I Lazaridis… - Scientific Data, 2024 - nature.com
More than two hundred papers have reported genome-wide data from ancient humans.
While the raw data for the vast majority are fully publicly available testifying to the …

Kinship practices in the early state El Argar society from Bronze Age Iberia

V Villalba-Mouco, C Oliart, C Rihuete-Herrada… - Scientific Reports, 2022 - nature.com
Abstract The Early Bronze Age in Europe is characterized by social and genetic
transformations, starting in the early 3rd millennium BCE. New settlement and funerary …

Patrilineal segmentary systems provide a peaceful explanation for the post-Neolithic Y-chromosome bottleneck

L Guyon, J Guez, B Toupance, E Heyer… - Nature …, 2024 - nature.com
Studies have found a pronounced decline in male effective population sizes worldwide
around 3000–5000 years ago. This bottleneck was not observed for female effective …

READv2: Advanced and user-friendly detection of biological relatedness in archaeogenomics

E Alaçamlı, T Naidoo, MN Güler, E Sağlıcan, Ş Aktürk… - Genome Biology, 2024 - Springer
The advent of genome-wide ancient DNA analysis has revolutionized our understanding of
prehistoric societies. However, studying biological relatedness in these groups requires …

Using runs of homozygosity and machine learning to disentangle sources of inbreeding and infer self-fertilization rates

L Zeitler, KJ Gilbert - Genome Biology and Evolution, 2024 - academic.oup.com
Runs of homozygosity (ROHs) are indicative of elevated homozygosity and inbreeding due
to mating of closely related individuals. Self-fertilization can be a major source of inbreeding …

Capturing the fusion of two ancestries and kinship structures in Merovingian Flanders

S Sasso, L Saag, R Spros, O Beneker… - Proceedings of the …, 2024 - pnas.org
The Merovingian period (5th to 8th cc AD) was a time of demographic, socioeconomic,
cultural, and political realignment in Western Europe. Here, we report the whole-genome …

Pre-processing of paleogenomes: Mitigating reference bias and postmortem damage in ancient genome data

D Koptekin, E Yapar, KB Vural, E Sağlıcan, NE Altınışık… - Genome biology, 2025 - Springer
We investigate alternative strategies against reference bias and postmortem damage in low
coverage paleogenomes. Compared to alignment to the linear reference genome, we show …

Extensive pedigrees reveal the social organization of a Neolithic community

M Rivollat, AB Rohrlach, H Ringbauer, A Childebayeva… - Nature, 2023 - nature.com
Social anthropology and ethnographic studies have described kinship systems and
networks of contact and exchange in extant populations,,–. However, for prehistoric …

[PDF][PDF] Ancient genomic research-From broad strokes to nuanced reconstructions of the past

K Nägele, M Rivollat, H Yu, K Wang - Journal of Anthropological …, 2022 - pure.mpg.de
Ancient DNA (aDNA) studies have deployed genetic material from archaeological contexts
to investigate human dispersals and interactions, corroborating some longstanding …

Materialising descent: lineage formation and transformation in Early Neolithic Southern Britain

V Cummings, C Fowler - Proceedings of the Prehistoric Society, 2023 - cambridge.org
This paper builds on the recent aDNA results from Hazleton North chambered tomb to
explore how people might have repeatedly negotiated kinship, descent, and affinity in Early …