The epitranscriptome beyond m6A

D Wiener, S Schwartz - Nature Reviews Genetics, 2021 - nature.com
Following its transcription, RNA can be modified by> 170 chemically distinct types of
modifications—the epitranscriptome. In recent years, there have been substantial efforts to …

Base editing: precision chemistry on the genome and transcriptome of living cells

HA Rees, DR Liu - Nature reviews genetics, 2018 - nature.com
RNA-guided programmable nucleases from CRISPR systems generate precise breaks in
DNA or RNA at specified positions. In cells, this activity can lead to changes in DNA …

RNA editing underlies genetic risk of common inflammatory diseases

Q Li, MJ Gloudemans, JM Geisinger, B Fan, F Aguet… - Nature, 2022 - nature.com
A major challenge in human genetics is to identify the molecular mechanisms of trait-
associated and disease-associated variants. To achieve this, quantitative trait locus (QTL) …

Genomic–transcriptomic evolution in lung cancer and metastasis

C Martínez-Ruiz, JRM Black, C Puttick, MS Hill… - Nature, 2023 - nature.com
Intratumour heterogeneity (ITH) fuels lung cancer evolution, which leads to immune evasion
and resistance to therapy. Here, using paired whole-exome and RNA sequencing data, we …

Evidence for host-dependent RNA editing in the transcriptome of SARS-CoV-2

S Di Giorgio, F Martignano, MG Torcia, G Mattiuz… - Science …, 2020 - science.org
The COVID-19 outbreak has become a global health risk, and understanding the response
of the host to the SARS-CoV-2 virus will help to combat the disease. RNA editing by host …

Loss of ADAR1 in tumours overcomes resistance to immune checkpoint blockade

JJ Ishizuka, RT Manguso, CK Cheruiyot, K Bi, A Panda… - Nature, 2019 - nature.com
Most patients with cancer either do not respond to immune checkpoint blockade or develop
resistance to it, often because of acquired mutations that impair antigen presentation. Here …

Inherited retinal diseases: linking genes, disease-causing variants, and relevant therapeutic modalities

N Schneider, Y Sundaresan, P Gopalakrishnan… - Progress in retinal and …, 2022 - Elsevier
Inherited retinal diseases (IRDs) are a clinically complex and heterogenous group of visual
impairment phenotypes caused by pathogenic variants in at least 277 nuclear and …

Engineered circular ADAR-recruiting RNAs increase the efficiency and fidelity of RNA editing in vitro and in vivo

Z Yi, L Qu, H Tang, Z Liu, Y Liu, F Tian, C Wang… - Nature …, 2022 - nature.com
Current methods for programmed RNA editing using endogenous ADAR enzymes and
engineered ADAR-recruiting RNAs (arRNAs) suffer from low efficiency and bystander off …

A-to-I RNA editing—immune protector and transcriptome diversifier

E Eisenberg, EY Levanon - Nature Reviews Genetics, 2018 - nature.com
Modifications of RNA affect its function and stability. RNA editing is unique among these
modifications because it not only alters the cellular fate of RNA molecules but also alters …

Direct identification of A-to-I editing sites with nanopore native RNA sequencing

TA Nguyen, JWJ Heng, P Kaewsapsak, EPL Kok… - Nature …, 2022 - nature.com
Inosine is a prevalent RNA modification in animals and is formed when an adenosine is
deaminated by the ADAR family of enzymes. Traditionally, inosines are identified indirectly …