Mitochondrial genetics through the lens of single-cell multi-omics

L Nitsch, CA Lareau, LS Ludwig - Nature genetics, 2024 - nature.com
Mitochondria carry their own genetic information encoding for a subset of protein-coding
genes and translational machinery essential for cellular respiration and metabolism. Despite …

[HTML][HTML] Mitochondrial DNA is a major source of driver mutations in cancer

M Kim, M Mahmood, E Reznik, PA Gammage - Trends in cancer, 2022 - cell.com
Mitochondrial DNA (mtDNA) mutations are among the most common genetic events in all
tumors and directly impact metabolic homeostasis. Despite the central role mitochondria …

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

CA Lareau, LS Ludwig, C Muus, SH Gohil, T Zhao… - Nature …, 2021 - nature.com
Natural mitochondrial DNA (mtDNA) mutations enable the inference of clonal relationships
among cells. mtDNA can be profiled along with measures of cell state, but has not yet been …

Specifications of the ACMG/AMP standards and guidelines for mitochondrial DNA variant interpretation

EM McCormick, MT Lott, MC Dulik, L Shen… - Human …, 2020 - Wiley Online Library
Mitochondrial DNA (mtDNA) variant pathogenicity interpretation has special considerations
given unique features of the mtDNA genome, including maternal inheritance, variant …

Role of mitochondrial alterations in human cancer progression and cancer immunity

SF Wang, LM Tseng, HC Lee - Journal of biomedical science, 2023 - Springer
Dysregulating cellular metabolism is one of the emerging cancer hallmarks. Mitochondria
are essential organelles responsible for numerous physiologic processes, such as energy …

Respiratory complex and tissue lineage drive recurrent mutations in tumour mtDNA

AN Gorelick, M Kim, WK Chatila, K La, AA Hakimi… - Nature …, 2021 - nature.com
Mitochondrial DNA (mtDNA) encodes protein subunits and translational machinery required
for oxidative phosphorylation (OXPHOS). Using repurposed whole-exome sequencing data …

Mitochondrial single-cell ATAC-seq for high-throughput multi-omic detection of mitochondrial genotypes and chromatin accessibility

CA Lareau, V Liu, C Muus, SD Praktiknjo, L Nitsch… - Nature protocols, 2023 - nature.com
Natural sequence variation within mitochondrial DNA (mtDNA) contributes to human
phenotypes and may serve as natural genetic markers in human cells for clonal and lineage …

Mitochondrial DNA mosaicism in normal human somatic cells

J An, CH Nam, R Kim, Y Lee, H Won, S Park, WH Lee… - Nature Genetics, 2024 - nature.com
Somatic cells accumulate genomic alterations with age; however, our understanding of
mitochondrial DNA (mtDNA) mosaicism remains limited. Here we investigated the genomes …

Germline mutations in mitochondrial complex I reveal genetic and targetable vulnerability in IDH1-mutant acute myeloid leukaemia

MA Bassal, SE Samaraweera, K Lim, BA Benard… - Nature …, 2022 - nature.com
The interaction of germline variation and somatic cancer driver mutations is under-
investigated. Here we describe the genomic mitochondrial landscape in adult acute myeloid …

[HTML][HTML] Development and validation of a metastasis-associated prognostic signature based on single-cell RNA-seq in clear cell renal cell carcinoma

C Zhang, H He, X Hu, A Liu, D Huang, Y Xu… - Aging (Albany …, 2019 - ncbi.nlm.nih.gov
Single-cell RNA sequencing (scRNA-seq) was recently adopted for deciphering intratumoral
heterogeneity across cell sub-populations, including clear cell renal cell carcinoma …