Expansion of the “sodium world” through evolutionary time and taxonomic space

MI Kozlova, IM Bushmakin, JD Belyaeva… - Biochemistry …, 2020 - Springer
Abstract In 1986, Vladimir Skulachev and his colleagues coined the term “Sodium World” for
the group of diverse organisms with sodium (Na)-based bioenergetics. Albeit only few such …

COG database update 2024

MY Galperin, R Vera Alvarez… - Nucleic Acids …, 2025 - academic.oup.com
Abstract The Clusters of Orthologous Genes (COG) database, originally created in 1997, has
been updated to reflect the constantly growing collection of completely sequenced …

Profiling signal transduction in global marine biofilms

R Wang, W Zhang, W Ding, Z Liang, L Long… - Frontiers in …, 2022 - frontiersin.org
Microbes use signal transduction systems in the processes of swarming motility, antibiotic
resistance, virulence, conjugal plasmid transfer, and biofilm formation. However, the signal …

Chained Structure of Dimeric F1-like ATPase in Mycoplasma mobile Gliding Machinery

T Toyonaga, T Kato, A Kawamoto, N Kodera… - MBio, 2021 - Am Soc Microbiol
Mycoplasma mobile, a fish pathogen, exhibits gliding motility using ATP hydrolysis on solid
surfaces, including animal cells. The gliding machinery can be divided into surface and …

A novel genus of actinobacterial Tectiviridae

SM Caruso, TN Decarvalho, A Huynh, G Morcos, N Kuo… - Viruses, 2019 - mdpi.com
Streptomyces phages WheeHeim and Forthebois are two novel members of the Tectiviridae
family. These phages were isolated on cultures of the plant pathogen Streptomyces scabiei …

Common mechanism of activated catalysis in P-loop fold nucleoside triphosphatases—United in diversity

MI Kozlova, DN Shalaeva, DV Dibrova… - Biomolecules, 2022 - mdpi.com
To clarify the obscure hydrolysis mechanism of ubiquitous P-loop-fold nucleoside
triphosphatases (Walker NTPases), we analysed the structures of 3136 catalytic sites with …

Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes

M Sánchez-Osuna, P Cortés, M Lee… - Nucleic acids …, 2021 - academic.oup.com
Lesions to DNA compromise chromosome integrity, posing a direct threat to cell survival.
The bacterial SOS response is a widespread transcriptional regulatory mechanism to …

The Leptospira interrogans proteome's response to zinc highlights the potential involvement of this metal in translational—machinery and virulence

AS Hecktheuer, CM Santos, FA Ferreira, AS Barbosa… - BioMetals, 2024 - Springer
Leptospires, as motile Gram-negative bacteria, employ sophisticated strategies for efficient
invasion and dissemination within their hosts. In response, hosts counteract pathogens …

The role of Tyr102 residue in the functioning of bacterial NAD+-dependent formate dehydrogenase of Pseudomonas sp. 101

АV Popinako, АА Pometun, DK Nilov… - Biochemical and …, 2022 - Elsevier
Once you have missed the first button…, you'll never manage to button up Johann Wolfgang
von Goethe Formate oxidation is a final step of methanol oxidation in methylotrophic …

Amino Acid Residues β139, β189, and β319 Modulate ADP-Inhibition in Escherichia coli H+-FOF1-ATP Synthase

AS Lapashina, TE Shugaeva, KM Berezina… - Biochemistry …, 2019 - Springer
Proton-translocating FOF 1-ATP synthase (F-type ATPase, F-ATPase or FOF 1) performs
ATP synthesis/hydrolysis coupled to proton transport across the membrane in mitochondria …