Artificial intelligence in oncology: chances and pitfalls

JN Kather - Journal of Cancer Research and Clinical Oncology, 2023 - Springer
Artificial intelligence (AI) has been available in rudimentary forms for many decades. Early AI
programs were successful in niche areas such as chess or handwriting recognition …

Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study

SJ Wagner, D Reisenbüchler, NP West, JM Niehues… - Cancer Cell, 2023 - cell.com
Deep learning (DL) can accelerate the prediction of prognostic biomarkers from routine
pathology slides in colorectal cancer (CRC). However, current approaches rely on …

Overcoming the challenges to implementation of artificial intelligence in pathology

JS Reis-Filho, JN Kather - JNCI: Journal of the National Cancer …, 2023 - academic.oup.com
Pathologists worldwide are facing remarkable challenges with increasing workloads and
lack of time to provide consistently high-quality patient care. The application of artificial …

[HTML][HTML] Deep learning trained on lymph node status predicts outcome from gastric cancer histopathology: a retrospective multicentric study

HS Muti, C Röcken, HM Behrens, CML Löffler… - European Journal of …, 2023 - Elsevier
Aim Gastric cancer (GC) is a tumour entity with highly variant outcomes. Lymph node
metastasis is a prognostically adverse biomarker. We hypothesised that GC primary tissue …

[HTML][HTML] PAIP 2020: Microsatellite instability prediction in colorectal cancer

K Kim, K Lee, S Cho, DU Kang, S Park, Y Kang… - Medical Image …, 2023 - Elsevier
Microsatellite instability (MSI) refers to alterations in the length of simple repetitive genomic
sequences. MSI status serves as a prognostic and predictive factor in colorectal cancer. The …

Weakly supervised deep learning predicts immunotherapy response in solid tumors based on PD-L1 expression

M Ligero, G Serna, OSM El Nahhas, I Sansano… - Cancer Research …, 2024 - AACR
Abstract Programmed death-ligand 1 (PD-L1) IHC is the most commonly used biomarker for
immunotherapy response. However, quantification of PD-L1 status in pathology slides is …

MYC Rearrangement Prediction From LYSA Whole Slide Images in Large B-Cell Lymphoma: A Multicentric Validation of Self-supervised Deep Learning Models

C Syrykh, V Di Proietto, E Brion, C Copie-Bergman… - Modern Pathology, 2024 - Elsevier
Large B-cell lymphoma (LBCL) is a heterogeneous lymphoid malignancy in which MYC
gene rearrangement (MYC-R) is associated with a poor prognosis, prompting the …

[HTML][HTML] Deep feature batch correction using ComBat for machine learning applications in computational pathology

P Murchan, PÓ Broin, AM Baird, O Sheils… - Journal of Pathology …, 2024 - Elsevier
Background Developing artificial intelligence (AI) models for digital pathology requires large
datasets from multiple sources. However, without careful implementation, AI models risk …

[HTML][HTML] Direct prediction of Homologous Recombination Deficiency from routine histology in ten different tumor types with attention-based Multiple Instance Learning …

CML Loeffler, OSM El Nahhas, HS Muti, T Seibel… - medRxiv, 2023 - ncbi.nlm.nih.gov
Background: Homologous Recombination Deficiency (HRD) is a pan-cancer predictive
biomarker that identifies patients who benefit from therapy with PARP inhibitors (PARPi) …

[PDF][PDF] Pan-cancer multimodal foundation models to predict neoadjuvant immunotherapy response

I Hond - 2024 - studenttheses.uu.nl
In this study, the main objective is to develop a large, pan-cancer multimodal foundation
model that can be used to predict response to neoadjuvant immunotherapy, an unmet need …