Detection of COVID-19-related biomarkers by electrochemical biosensors and potential for diagnosis, prognosis, and prediction of the course of the disease in the …

V Vásquez, J Orozco - Analytical and bioanalytical chemistry, 2023 - Springer
As a more efficient and effective way to address disease diagnosis and intervention, cutting-
edge technologies, devices, therapeutic approaches, and practices have emerged within the …

Identification of potential plant bioactive as SARS-CoV-2 Spike protein and human ACE2 fusion inhibitors

R Singh, VK Bhardwaj, J Sharma, D Kumar… - Computers in Biology …, 2021 - Elsevier
The Spike receptor binding domain (S-RBD) from SARS-CoV-2, a crucial protein for the
entrance of the virus into target cells is known to cause infection by binding to a cell surface …

S protein, ACE2 and host cell proteases in SARS-CoV-2 cell entry and infectivity; is soluble ACE2 a two blade sword? A narrative review

R Nejat, MF Torshizi, DJ Najafi - Vaccines, 2023 - mdpi.com
Since the spread of the deadly virus SARS-CoV-2 in late 2019, researchers have restlessly
sought to unravel how the virus enters the host cells. Some proteins on each side of the …

Biomolecular dynamics with machine-learned quantum-mechanical force fields trained on diverse chemical fragments

OT Unke, M Stöhr, S Ganscha, T Unterthiner… - Science …, 2024 - science.org
Molecular dynamics (MD) simulations allow insights into complex processes, but accurate
MD simulations require costly quantum-mechanical calculations. For larger systems, efficient …

Machine learning reveals the critical interactions for SARS-CoV-2 spike protein binding to ACE2

A Pavlova, Z Zhang, A Acharya, DL Lynch… - The journal of …, 2021 - ACS Publications
SARS-CoV and SARS-CoV-2 bind to the human ACE2 receptor in practically identical
conformations, although several residues of the receptor-binding domain (RBD) differ …

SARS-CoV-2 electrochemical immunosensor based on the spike-ACE2 complex

V Vásquez, MC Navas, JA Jaimes, J Orozco - Analytica chimica acta, 2022 - Elsevier
Rapid, straightforward, and massive diagnosis of coronavirus disease 2019 (COVID-19) is
one of the more important measures to mitigate the current pandemics. This work reports on …

ACE2 N-glycosylation modulates interactions with SARS-CoV-2 spike protein in a site-specific manner

A Isobe, Y Arai, D Kuroda, N Okumura, T Ono… - Communications …, 2022 - nature.com
SARS-CoV-2 has evolved continuously and accumulated spike mutations with each variant
having a different binding for the cellular ACE2 receptor. It is not known whether the …

Accurate machine learned quantum-mechanical force fields for biomolecular simulations

OT Unke, M Stöhr, S Ganscha, T Unterthiner… - arXiv preprint arXiv …, 2022 - arxiv.org
Molecular dynamics (MD) simulations allow atomistic insights into chemical and biological
processes. Accurate MD simulations require computationally demanding quantum …

Electrostatic interactions are the primary determinant of the binding affinity of SARS-CoV-2 spike RBD to ACE2: A computational case study of omicron variants

P Sang, YQ Chen, MT Liu, YT Wang, T Yue… - International Journal of …, 2022 - mdpi.com
To explore the mechanistic origin that determines the binding affinity of SARS-CoV-2 spike
receptor binding domain (RBD) to human angiotensin converting enzyme 2 (ACE2), we …

Structure-guided glyco-engineering of ACE2 for improved potency as soluble SARS-CoV-2 decoy receptor

T Capraz, NF Kienzl, E Laurent, JW Perthold… - Elife, 2021 - elifesciences.org
Infection and viral entry of SARS-CoV-2 crucially depends on the binding of its Spike protein
to angiotensin converting enzyme 2 (ACE2) presented on host cells. Glycosylation of both …