A review of deep learning applications in human genomics using next-generation sequencing data

WS Alharbi, M Rashid - Human Genomics, 2022 - Springer
Genomics is advancing towards data-driven science. Through the advent of high-throughput
data generating technologies in human genomics, we are overwhelmed with the heap of …

Genetic modifiers and rare Mendelian disease

KMTH Rahit, M Tarailo-Graovac - Genes, 2020 - mdpi.com
Despite advances in high-throughput sequencing that have revolutionized the discovery of
gene defects in rare Mendelian diseases, there are still gaps in translating individual …

Artificial intelligence, big data and machine learning approaches in precision medicine & drug discovery

A Nayarisseri, R Khandelwal, P Tanwar… - Current drug …, 2021 - ingentaconnect.com
Artificial Intelligence revolutionizes the drug development process that can quickly identify
potential biologically active compounds from millions of candidate within a short period. The …

Artificial intelligence (AI) in rare diseases: is the future brighter?

S Brasil, C Pascoal, R Francisco, V dos Reis Ferreira… - Genes, 2019 - mdpi.com
The amount of data collected and managed in (bio) medicine is ever-increasing. Thus, there
is a need to rapidly and efficiently collect, analyze, and characterize all this information …

[HTML][HTML] Interpretable clinical genomics with a likelihood ratio paradigm

PN Robinson, V Ravanmehr, JOB Jacobsen… - The American Journal of …, 2020 - cell.com
Human Phenotype Ontology (HPO)-based analysis has become standard for genomic
diagnostics of rare diseases. Current algorithms use a variety of semantic and statistical …

[HTML][HTML] Toward clinical implementation of next-generation sequencing-based genetic testing in rare diseases: where are we?

Z Liu, L Zhu, R Roberts, W Tong - Trends in Genetics, 2019 - cell.com
Next-generation sequencing (NGS) technologies have changed the landscape of genetic
testing in rare diseases. However, the rapid evolution of NGS technologies has outpaced its …

Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases

X Yuan, J Wang, B Dai, Y Sun, K Zhang… - Briefings in …, 2022 - academic.oup.com
It's challenging work to identify disease-causing genes from the next-generation sequencing
(NGS) data of patients with Mendelian disorders. To improve this situation, researchers have …

Phenotype-aware prioritisation of rare Mendelian disease variants

C Kelly, A Szabo, N Pontikos, G Arno, PN Robinson… - Trends in Genetics, 2022 - cell.com
A molecular diagnosis from the analysis of sequencing data in rare Mendelian diseases has
a huge impact on the management of patients and their families. Numerous patient …

Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases

M Zhao, JM Havrilla, L Fang, Y Chen… - NAR genomics and …, 2020 - academic.oup.com
Abstract Human Phenotype Ontology (HPO) terms are increasingly used in diagnostic
settings to aid in the characterization of patient phenotypes. The HPO annotation database …

Phenotype‐driven approaches to enhance variant prioritization and diagnosis of rare disease

JOB Jacobsen, C Kelly, V Cipriani… - Human …, 2022 - Wiley Online Library
Rare disease diagnostics and disease gene discovery have been revolutionized by whole‐
exome and genome sequencing but identifying the causative variant (s) from the millions in …