Exploring cellular biochemistry with nanobodies

RW Cheloha, TJ Harmand, C Wijne… - Journal of Biological …, 2020 - ASBMB
Reagents that bind tightly and specifically to biomolecules of interest remain essential in the
exploration of biology and in their ultimate application to medicine. Besides ligands for …

Advances in epitope mapping technologies for food protein allergens: A review

F Zhou, S He, H Sun, Y Wang, Y Zhang - Trends in Food Science & …, 2021 - Elsevier
Background The incidence of food allergy has been increasing in recent years, but the
prevention, diagnosis, and treatment of food allergy remain challenges in the world. Food …

A method for structure determination of GPCRs in various states

Q Guo, B He, Y Zhong, H Jiao, Y Ren, Q Wang… - Nature Chemical …, 2024 - nature.com
G-protein-coupled receptors (GPCRs) are a class of integral membrane proteins that detect
environmental cues and trigger cellular responses. Deciphering the functional states of …

Structure determination of inactive-state GPCRs with a universal nanobody

MJ Robertson, MM Papasergi-Scott, F He… - Nature Structural & …, 2022 - nature.com
Cryogenic electron microscopy (cryo-EM) has widened the field of structure-based drug
discovery by allowing for routine determination of membrane protein structures previously …

Structure of an AMPK complex in an inactive, ATP-bound state

Y Yan, S Mukherjee, KG Harikumar, TS Strutzenberg… - Science, 2021 - science.org
Adenosine monophosphate (AMP)–activated protein kinase (AMPK) regulates metabolism
in response to the cellular energy states. Under energy stress, AMP stabilizes the active …

Structures of atypical chemokine receptor 3 reveal the basis for its promiscuity and signaling bias

YC Yen, CT Schafer, M Gustavsson, SA Eberle… - Science …, 2022 - science.org
Both CXC chemokine receptor 4 (CXCR4) and atypical chemokine receptor 3 (ACKR3) are
activated by the chemokine CXCL12 yet evoke distinct cellular responses. CXCR4 is a …

Development of a universal nanobody-binding Fab module for fiducial-assisted cryo-EM studies of membrane proteins

JS Bloch, S Mukherjee, J Kowal… - Proceedings of the …, 2021 - National Acad Sciences
With conformation-specific nanobodies being used for a wide range of structural,
biochemical, and cell biological applications, there is a demand for antigen-binding …

Structure of human Frizzled5 by fiducial-assisted cryo-EM supports a heterodimeric mechanism of canonical Wnt signaling

N Tsutsumi, S Mukherjee, D Waghray, CY Janda… - elife, 2020 - elifesciences.org
Frizzleds (Fzd) are the primary receptors for Wnt morphogens, which are essential
regulators of stem cell biology, yet the structural basis of Wnt signaling through Fzd remains …

Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase

JS Bloch, A John, R Mao, S Mukherjee… - Nature chemical …, 2023 - nature.com
C-linked glycosylation is essential for the trafficking, folding and function of secretory and
transmembrane proteins involved in cellular communication processes. The tryptophan C …

Structural basis for assembly and lipid-mediated gating of LRRC8A: C volume-regulated anion channels

DM Kern, J Bleier, S Mukherjee, JM Hill… - Nature Structural & …, 2023 - nature.com
Leucine-rich repeat-containing protein 8 (LRRC8) family members form volume-regulated
anion channels activated by hypoosmotic cell swelling. LRRC8 channels are ubiquitously …