Strategies for culturing active/dormant marine microbes

DS Mu, Y Ouyang, GJ Chen, ZJ Du - Marine Life Science & Technology, 2021 - Springer
Microorganisms are ubiquitous in the ocean environment and they play key roles in marine
ecosystem function and service. However, many of their functions and phenotypes remain …

Metatranscriptomic and comparative genomic insights into resuscitation mechanisms during enrichment culturing

DS Mu, QY Liang, XM Wang, DC Lu, MJ Shi, GJ Chen… - Microbiome, 2018 - Springer
Background The pure culture of prokaryotes remains essential to elucidating the role of
these organisms. Scientists have reasoned that hard to cultivate microorganisms might grow …

Metagenomic and metatranscriptomic analyses revealed uncultured bacteroidales populations as the dominant proteolytic amino acid degraders in anaerobic …

R Mei, MK Nobu, T Narihiro, WT Liu - Frontiers in microbiology, 2020 - frontiersin.org
Current understanding of amino acid (AA) degraders in anaerobic digesters is mainly based
on cultured species, whereas microorganisms that play important roles in a complex …

Microbial production of cyanophycin: from enzymes to biopolymers

J Du, L Li, S Zhou - Biotechnology advances, 2019 - Elsevier
Cyanophycin is an attractive biopolymer with chemical and material properties that are
suitable for industrial applications in the fields of food, medicine, cosmetics, nutrition, and …

Identification and cultivation of anaerobic bacterial scavengers of dead cells

Y Hirakata, R Mei, K Morinaga, T Katayama… - The ISME …, 2023 - academic.oup.com
The cycle of life and death and Earth's carbon cycle (s) are intimately linked, yet how
bacterial cells, one of the largest pools of biomass on Earth, are recycled back into the …

Macrofaunal control of microbial community structure in continental margin sediments

L Deng, D Bölsterli, E Kristensen… - Proceedings of the …, 2020 - National Acad Sciences
Through a process called “bioturbation,” burrowing macrofauna have altered the seafloor
habitat and modified global carbon cycling since the Cambrian. However, the impact of …

Ecological interactions of cyanobacteria and heterotrophs enhances the robustness of cyanobacterial consortium for carbon sequestration

M Ataeian, Y Liu, A Kouris, AK Hawley… - Frontiers in …, 2022 - frontiersin.org
Lack of robustness is a major barrier to foster a sustainable cyanobacterial biotechnology.
Use of cyanobacterial consortium increases biodiversity, which provides functional …

Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities

TP Barnum, IA Figueroa, CI Carlström… - The ISME …, 2018 - academic.oup.com
Dissimilatory perchlorate reduction is an anaerobic respiratory pathway that in communities
might be influenced by metabolic interactions. Because the genes for perchlorate reduction …

Consensus assessment of the contamination level of publicly available cyanobacterial genomes

L Cornet, L Meunier, M Van Vlierberghe, RR Léonard… - PLoS one, 2018 - journals.plos.org
Publicly available genomes are crucial for phylogenetic and metagenomic studies, in which
contaminating sequences can be the cause of major problems. This issue is expected to be …

Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system

B Pontiller, S Martínez-García, V Joglar… - The ISME …, 2022 - academic.oup.com
Coastal upwelling zones are hotspots of oceanic productivity, driven by phytoplankton
photosynthesis. Bacteria, in turn, grow on and are the principal remineralizers of dissolved …