Multiscale simulations of the covalent inhibition of the SARS-CoV-2 main protease: Four compounds and three reaction mechanisms

BL Grigorenko, IV Polyakov, MG Khrenova… - Journal of the …, 2023 - ACS Publications
We report the results of computational modeling of the reactions of the SARS-CoV-2 main
protease (MPro) with four potential covalent inhibitors. Two of them, carmofur and …

Catalytic Mechanism of SARS-CoV-2 3-Chymotrypsin-like Protease as Determined by Steady-State and Pre-Steady-State Kinetics

J Zhu, AM Kemp, BC Chenna, V Kumar… - ACS …, 2024 - ACS Publications
The 3-chymotrypsin-like protease (3CL-PR; also known as Main protease) of SARS-CoV-2
is a cysteine protease that is the target of the COVID-19 drug, Paxlovid. Here, we report for …

Docking and other computing tools in drug design against SARS-CoV-2

AV Sulimov, IS Ilin, AS Tashchilova… - SAR and QSAR in …, 2024 - Taylor & Francis
The use of computer simulation methods has become an indispensable component in
identifying drugs against the SARS-CoV-2 coronavirus. There is a huge body of literature on …

Genetically encoded fluorescent sensors for SARS-CoV-2 papain-like protease PLpro

EL Sokolinskaya, LV Putlyaeva… - International Journal of …, 2022 - mdpi.com
In the SARS-CoV-2 lifecycle, papain-like protease PLpro cuts off the non-structural proteins
nsp1, nsp2, and nsp3 from a large polyprotein. This is the earliest viral enzymatic activity …

Pomotrelvir and Nirmatrelvir Binding and Reactivity with SARS‐CoV‐2 Main Protease: Implications for Resistance Mechanisms from Computations

J Schillings, CA Ramos‐Guzmán… - Angewandte Chemie …, 2024 - Wiley Online Library
We investigate the inhibition mechanism between pomotrelvir and the SARS‐CoV‐2 main
protease using molecular mechanics and quantum mechanics/molecular mechanics …

The main protease 3CLpro of the SARS-CoV-2 virus: how to turn an enemy into a helper

SV Belenkaya, IA Merkuleva, OI Yarovaya… - … in Bioengineering and …, 2023 - frontiersin.org
Despite the long history of use and the knowledge of the genetics and biochemistry of E.
coli, problems are still possible in obtaining a soluble form of recombinant proteins in this …

Ensemble docking based virtual screening of SARS‐CoV‐2 main protease inhibitors

AD Fomina, VI Uvarova, LI Kozlovskaya… - Molecular …, 2024 - Wiley Online Library
During the first years of COVID‐19 pandemic, X‐ray structures of the coronavirus drug
targets were acquired at an unprecedented rate, giving hundreds of PDB depositions in less …

Transition Metal-Based Antiviral Agents Against SARS-CoV-2 and Other Pathogenic Viruses

M Gil-Moles, I Ott - Targeted Metallo-Drugs, 2023 - taylorfrancis.com
106While metal complexes have been playing an important role in medicinal inorganic
chemistry for the development of novel anticancer agents, their application as antiviral …

[HTML][HTML] ПОДХОД К РАЗРАБОТКЕ ПРОЛЕКАРСТВА НА ОСНОВЕ АМИКУМАЦИНА А

ВИ Шмыгарев, ЮА Прокопенко… - Вестник Российского …, 2022 - cyberleninka.ru
Современная коронавирусная болезнь COVID-19, вызываемая вирусом SARS-CoV-2,
характеризуется высокой контагиозностью и тяжелым течением. Оказание помощи …

КАК СОЗДАЮТСЯ ЛЕКАРСТВА, ИЛИ ПО ВИРУСУ-ПРЯМОЙ НАВОДКОЙ

НА КУЗНЕЦОВ, АА КУЗНЕЦОВА, АА БУЛЫГИН - НАУКА ИЗ ПЕРВЫХ РУК - elibrary.ru
Население Земли за последние столетия стремительно выросло, достигнув без
малого 8 млрд человек. Во многом это произошло благодаря успехам медицины, в …