Recent advances in biomedical literature mining

S Zhao, C Su, Z Lu, F Wang - Briefings in Bioinformatics, 2021 - academic.oup.com
The recent years have witnessed a rapid increase in the number of scientific articles in
biomedical domain. These literature are mostly available and readily accessible in …

[HTML][HTML] Clinical named entity recognition and relation extraction using natural language processing of medical free text: A systematic review

DF Navarro, K Ijaz, D Rezazadegan… - International Journal of …, 2023 - Elsevier
Abstract Background Natural Language Processing (NLP) applications have developed
over the past years in various fields including its application to clinical free text for named …

Knowledge-informed semantic alignment and rule interpretation for automated compliance checking

Z Zheng, YC Zhou, XZ Lu, JR Lin - Automation in Construction, 2022 - Elsevier
As an essential prodecure to improve design quality in the construction industry, automated
rule checking (ARC) requires intelligent rule interpretation from regulatory texts and precise …

[HTML][HTML] Bert-based ranking for biomedical entity normalization

Z Ji, Q Wei, H Xu - AMIA Summits on Translational Science …, 2020 - ncbi.nlm.nih.gov
Developing high-performance entity normalization algorithms that can alleviate the term
variation problem is of great interest to the biomedical community. Although deep learning …

[PDF][PDF] Semeval-2014 task 7: Analysis of clinical text

S Pradhan, N Elhadad, W Chapman… - Proceedings of the …, 2014 - aclanthology.org
This paper describes the SemEval-2014, Task 7 on the Analysis of Clinical Text and
presents the evaluation results. It focused on two subtasks:(i) identification (Task A) and (ii) …

CNN-based ranking for biomedical entity normalization

H Li, Q Chen, B Tang, X Wang, H Xu, B Wang… - BMC …, 2017 - Springer
Background Most state-of-the-art biomedical entity normalization systems, such as rule-
based systems, merely rely on morphological information of entity mentions, but rarely …

[PDF][PDF] Sieve-based entity linking for the biomedical domain

J D'Souza, V Ng - Proceedings of the 53rd Annual Meeting of the …, 2015 - aclanthology.org
We examine a key task in biomedical text processing, normalization of disorder mentions.
We present a multi-pass sieve approach to this task, which has the advantage of simplicity …

[HTML][HTML] Medical concept normalization in social media posts with recurrent neural networks

E Tutubalina, Z Miftahutdinov, S Nikolenko… - Journal of biomedical …, 2018 - Elsevier
Text mining of scientific libraries and social media has already proven itself as a reliable tool
for drug repurposing and hypothesis generation. The task of mapping a disease mention to …

Deep neural models for medical concept normalization in user-generated texts

Z Miftahutdinov, E Tutubalina - arXiv preprint arXiv:1907.07972, 2019 - arxiv.org
In this work, we consider the medical concept normalization problem, ie, the problem of
mapping a health-related entity mention in a free-form text to a concept in a controlled …

A lightweight neural model for biomedical entity linking

L Chen, G Varoquaux, FM Suchanek - Proceedings of the AAAI …, 2021 - ojs.aaai.org
Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to
standard entities in a given knowledge base. The specific challenge in this context is that the …