Systems biology of mammalian circadian clocks

H Ukai, HR Ueda - Annual review of physiology, 2010 - annualreviews.org
Systems biology is a natural extension of molecular biology; it can be defined as biology
after identification of key gene (s). Systems-biological research is a multistage process …

Sloppiness, robustness, and evolvability in systems biology

BC Daniels, YJ Chen, JP Sethna… - Current opinion in …, 2008 - Elsevier
The functioning of many biochemical networks is often robust—remarkably stable under
changes in external conditions and internal reaction parameters. Much recent work on …

Robust, tunable biological oscillations from interlinked positive and negative feedback loops

TYC Tsai, YS Choi, W Ma, JR Pomerening, C Tang… - Science, 2008 - science.org
A simple negative feedback loop of interacting genes or proteins has the potential to
generate sustained oscillations. However, many biological oscillators also have a positive …

The Molecular Basis of Temperature Compensation in the Arabidopsis Circadian Clock

PD Gould, JCW Locke, C Larue, MM Southern… - The Plant …, 2006 - academic.oup.com
Circadian clocks maintain robust and accurate timing over a broad range of physiological
temperatures, a characteristic termed temperature compensation. In Arabidopsis thaliana …

Genetic and Molecular Analysis of Circadian Rhythms in N eurospora

JJ Loros, JC Dunlap - Annual review of physiology, 2001 - annualreviews.org
▪ Abstract Over the course of the past 40 years Neurospora has become a well-known and
uniquely tractable model system for the analysis of the molecular basis of eukaryotic …

A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM

JJ Tyson, CI Hong, CD Thron, B Novak - Biophysical journal, 1999 - cell.com
Many organisms display rhythms of physiology and behavior that are entrained to the 24-h
cycle of light and darkness prevailing on Earth. Under constant conditions of illumination …

The Goodwin oscillator and its legacy

D Gonze, P Ruoff - Acta Biotheoretica, 2021 - Springer
Abstract In the 1960's Brian Goodwin published a couple of mathematical models showing
how feedback inhibition can lead to oscillations and discussed possible implications of this …

An allosteric model of circadian KaiC phosphorylation

JS van Zon, DK Lubensky… - Proceedings of the …, 2007 - National Acad Sciences
In a recent series of ground-breaking experiments, Nakajima et al.[Nakajima M, Imai K, Ito H,
Nishiwaki T, Murayama Y, Iwasaki H, Oyama T, Kondo T (2005) Science 308: 414–415] …

Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock

KD Edwards, JR Lynn, P Gyula, F Nagy, AJ Millar - Genetics, 2005 - academic.oup.com
Temperature compensation is a defining feature of circadian oscillators, yet no components
contributing to the phenomenon have been identified in plants. We tested 27 accessions of …

Temperature-robust neural function from activity-dependent ion channel regulation

T O'Leary, E Marder - Current Biology, 2016 - cell.com
Many species of cold-blooded animals experience substantial and rapid fluctuations in body
temperature. Because biological processes are differentially temperature dependent, it is …