Retrosynthesis prediction with an iterative string editing model

Y Han, X Xu, CY Hsieh, K Ding, H Xu, R Xu… - Nature …, 2024 - nature.com
Retrosynthesis is a crucial task in drug discovery and organic synthesis, where artificial
intelligence (AI) is increasingly employed to expedite the process. However, existing …

[HTML][HTML] Molecule generation for drug design: a graph learning perspective

N Yang, H Wu, K Zeng, Y Li, S Bao, J Yan - Fundamental Research, 2024 - Elsevier
Abstract Machine learning, particularly graph learning, is gaining increasing recognition for
its transformative impact across various fields. One such promising application is in the …

A unified view of deep learning for reaction and retrosynthesis prediction: current status and future challenges

Z Meng, P Zhao, Y Yu, I King - arXiv preprint arXiv:2306.15890, 2023 - arxiv.org
Reaction and retrosynthesis prediction are fundamental tasks in computational chemistry
that have recently garnered attention from both the machine learning and drug discovery …

[HTML][HTML] Machine learning-assisted retrosynthesis planning: current status and future prospects

Y Wei, L Shan, T Qiu, D Lu, Z Liu - Chinese Journal of Chemical …, 2024 - Elsevier
Abstract Machine learning-assisted retrosynthesis planning aims to utilize machine learning
(ML) algorithms to find synthetic pathways for target compounds. In recent years, with the …

Node-aligned graph-to-graph: Elevating template-free deep learning approaches in single-step retrosynthesis

L Yao, W Guo, Z Wang, S Xiang, W Liu, G Ke - JACS Au, 2024 - ACS Publications
Single-step retrosynthesis in organic chemistry increasingly benefits from deep learning
(DL) techniques in computer-aided synthesis design. While template-free DL models are …

RLSynC: Offline–Online Reinforcement Learning for Synthon Completion

FN Baker, Z Chen, D Adu-Ampratwum… - Journal of Chemical …, 2024 - ACS Publications
Retrosynthesis is the process of determining the set of reactant molecules that can react to
form a desired product. Semitemplate-based retrosynthesis methods, which imitate the …

RetroCaptioner: beyond attention in end-to-end retrosynthesis transformer via contrastively captioned learnable graph representation

X Liu, C Ai, H Yang, R Dong, J Tang, S Zheng… - …, 2024 - academic.oup.com
Motivation Retrosynthesis identifies available precursor molecules for various and novel
compounds. With the advancements and practicality of language models, Transformer …

Chemical reaction enhanced graph learning for molecule representation

A Li, E Casiraghi, J Rousu - Bioinformatics, 2024 - academic.oup.com
Motivation Molecular representation learning (MRL) models molecules with low-dimensional
vectors to support biological and chemical applications. Current methods primarily rely on …

Preference Optimization for Molecule Synthesis with Conditional Residual Energy-based Models

S Liu, H Dai, Y Zhao, P Liu - arXiv preprint arXiv:2406.02066, 2024 - arxiv.org
Molecule synthesis through machine learning is one of the fundamental problems in drug
discovery. Current data-driven strategies employ one-step retrosynthesis models and search …

Identifying the reaction centers of molecule based on dual-view representation

H Yu, J Wang, C Song, JY Shi - Knowledge-Based Systems, 2024 - Elsevier
In the process of drug retrosynthesis, identifying the reaction centers where the chemical
reactions occurring is an important fundamental issue in semi-templated models. However …