Proteomic strategies for characterizing ubiquitin-like modifications

C Li, TG Nelson, ACO Vertegaal… - Nature Reviews Methods …, 2021 - nature.com
The modification of proteins by the addition of ubiquitin and other ubiquitin-like proteins
(UBLs) is involved in a wide range of cellular processes including cell cycle progression, the …

Ubiquitin-like modifiers: emerging regulators of protozoan parasites

M Karpiyevich, K Artavanis-Tsakonas - Biomolecules, 2020 - mdpi.com
Post-translational protein regulation allows for fine-tuning of cellular functions and involves a
wide range of modifications, including ubiquitin and ubiquitin-like modifiers (Ubls). The …

PSSM-Sumo: deep learning based intelligent model for prediction of sumoylation sites using discriminative features

S Khan, SA AlQahtani, S Noor, N Ahmad - BMC bioinformatics, 2024 - Springer
Post-translational modifications (PTMs) are fundamental to essential biological processes,
exerting significant influence over gene expression, protein localization, stability, and …

SUMOylation of RNF146 results in Axin degradation and activation of Wnt/β-catenin signaling to promote the progression of hepatocellular carcinoma

W Li, Q Han, Y Zhu, Y Zhou, J Zhang, W Wu, Y Li, L Liu… - Oncogene, 2023 - nature.com
Aberrant SUMOylation contributes to the progression of hepatocellular carcinoma (HCC), yet
the molecular mechanisms have not been well elucidated. RING-type E3 ubiquitin ligase …

Enhancing sumoylation site prediction: A deep neural network with discriminative features

S Khan, M Khan, N Iqbal, N Dilshad, MF Almufareh… - Life, 2023 - mdpi.com
Sumoylation is a post-translation modification (PTM) mechanism that involves many critical
biological processes, such as gene expression, localizing and stabilizing proteins, and …

SumoPred-PLM: human SUMOylation and SUMO2/3 sites Prediction using Pre-trained Protein Language Model

AV Palacios, P Acharya, AS Peidl… - NAR Genomics and …, 2024 - academic.oup.com
SUMOylation is an essential post-translational modification system with the ability to
regulate nearly all aspects of cellular physiology. Three major paralogues SUMO1, SUMO2 …

ResSUMO: A deep learning architecture based on residual structure for prediction of lysine SUMOylation sites

Y Zhu, Y Liu, Y Chen, L Li - Cells, 2022 - mdpi.com
Lysine SUMOylation plays an essential role in various biological functions. Several
approaches integrating various algorithms have been developed for predicting SUMOylation …

Insights on post-translational modifications in fatty liver and fibrosis progression

C Raju, K Sankaranarayanan - … et Biophysica Acta (BBA)-Molecular Basis …, 2025 - Elsevier
Metabolic dysfunction-associated steatotic liver disease [MASLD] is a pervasive
multifactorial health burden. Post-translational modifications [PTMs] of amino acid residues …

iProtGly-SS: a tool to accurately predict protein glycation site using structural-based features

I Dehzangi, A Sharma, S Shatabda - Computational Methods for Predicting …, 2022 - Springer
Posttranslational modification (PTM) is an important biological mechanism to promote
functional diversity among the proteins. So far, a wide range of PTMs has been identified …

An application of topological data analysis in predicting sumoylation sites

X Lin, Y Gao, F Lei - PeerJ, 2023 - peerj.com
Sumoylation is a reversible post-translational modification that regulates certain significant
biochemical functions in proteins. The protein alterations caused by sumoylation are …