Organization and function of the 3D genome

B Bonev, G Cavalli - Nature Reviews Genetics, 2016 - nature.com
Understanding how chromatin is organized within the nucleus and how this 3D architecture
influences gene regulation, cell fate decisions and evolution are major questions in cell …

Three-dimensional genome architecture: players and mechanisms

A Pombo, N Dillon - Nature reviews Molecular cell biology, 2015 - nature.com
The different cell types of an organism share the same DNA, but during cell differentiation
their genomes undergo diverse structural and organizational changes that affect gene …

[HTML][HTML] Physiological relevance of cell cycle kinases

M Malumbres - Physiological reviews, 2011 - journals.physiology.org
The basic biology of the cell division cycle and its control by protein kinases was originally
studied through genetic and biochemical studies in yeast and other model organisms. The …

Survey of the year 2007 commercial optical biosensor literature

RL Rich, DG Myszka - Journal of Molecular Recognition: An …, 2008 - Wiley Online Library
In 2007, 1179 papers were published that involved the application of optical biosensors.
Reported developments in instrument hardware, assay design, and immobilization …

ComPPI: a cellular compartment-specific database for protein–protein interaction network analysis

DV Veres, DM Gyurkó, B Thaler, KZ Szalay… - Nucleic acids …, 2015 - academic.oup.com
Here we present ComPPI, a cellular compartment-specific database of proteins and their
interactions enabling an extensive, compartmentalized protein–protein interaction network …

Visualizing histone modifications in living cells: spatiotemporal dynamics of H3 phosphorylation during interphase

Y Hayashi-Takanaka, K Yamagata, N Nozaki… - Journal of Cell …, 2009 - rupress.org
Posttranslational histone modifications regulate both gene expression and genome integrity.
Despite the dynamic nature of these modifications, appropriate real-time monitoring systems …

Proteomic analysis of blastema formation in regenerating axolotl limbs

N Rao, D Jhamb, DJ Milner, B Li, F Song, M Wang… - BMC biology, 2009 - Springer
Background Following amputation, urodele salamander limbs reprogram somatic cells to
form a blastema that self-organizes into the missing limb parts to restore the structure and …

Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast

A Koch, K Krug, S Pengelley, B Macek, S Hauf - Science signaling, 2011 - science.org
Kinases of the Aurora family are essential for the proper execution of mitosis in eukaryotes,
and Aurora inhibitors are in clinical trials as anticancer drugs. We applied site-specific …

H3K9 trimethylation dictates neuronal ferroptosis through repressing Tfr1

T Lan, L Hu, T Sun, X Wang, Z Xiao… - Journal of Cerebral …, 2023 - journals.sagepub.com
Spontaneous intracerebral hemorrhage (ICH) is a devastating disease with high morbidity
and mortality worldwide. We have previously shown that ferroptosis contributes to neuronal …

Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing

R Schep, M Trauernicht, X Vergara… - Nucleic Acids …, 2024 - academic.oup.com
The efficiency and outcome of CRISPR/Cas9 editing depends on the chromatin state at the
cut site. It has been shown that changing the chromatin state can influence both the …