The evolution of gene duplications: classifying and distinguishing between models

H Innan, F Kondrashov - Nature Reviews Genetics, 2010 - nature.com
Gene duplications and their subsequent divergence play an important part in the evolution
of novel gene functions. Several models for the emergence, maintenance and evolution of …

Slipped-strand mispairing: a major mechanism for DNA sequence evolution.

G Levinson, GA Gutman - Molecular biology and evolution, 1987 - academic.oup.com
Simple repetitive DNA sequences are a widespread and abundant feature of genomic DNA.
The following several features characterize such sequences:(1) they typically consist of a …

Construction of Escherichia coli K‐12 in‐frame, single‐gene knockout mutants: the Keio collection

T Baba, T Ara, M Hasegawa, Y Takai… - Molecular systems …, 2006 - embopress.org
We have systematically made a set of precisely defined, single‐gene deletions of all
nonessential genes in Escherichia coli K‐12. Open‐reading frame coding regions were …

Transposable elements, epigenetics, and genome evolution

NV Fedoroff - Science, 2012 - science.org
2012 still-prevalent view that every bit of an organism's DNA has a specific function crafted
by selection. Thus, both papers promoted Dawkins' concept of “selfish DNA”—the notion that …

Bacterial genome instability

E Darmon, DRF Leach - Microbiology and Molecular Biology …, 2014 - Am Soc Microbiol
Bacterial genomes are remarkably stable from one generation to the next but are plastic on
an evolutionary time scale, substantially shaped by horizontal gene transfer, genome …

[HTML][HTML] Mechanisms of gene duplication and amplification

AB Reams, JR Roth - Cold Spring Harbor perspectives …, 2015 - cshperspectives.cshlp.org
Abstract Changes in gene copy number are among the most frequent mutational events in
all genomes and were among the mutations for which a physical basis was first known. Yet …

Selection in the evolution of gene duplications

FA Kondrashov, IB Rogozin, YI Wolf, EV Koonin - Genome biology, 2002 - Springer
Background Gene duplications have a major role in the evolution of new biological
functions. Theoretical studies often assume that a duplication per se is selectively neutral …

Long-term survival during stationary phase: evolution and the GASP phenotype

SE Finkel - Nature Reviews Microbiology, 2006 - nature.com
The traditional view of the stationary phase of the bacterial life cycle, obtained using
standard laboratory culture practices, although useful, might not always provide us with the …

Expandable and reversible copy number amplification drives rapid adaptation to antifungal drugs

RT Todd, A Selmecki - Elife, 2020 - elifesciences.org
Previously, we identified long repeat sequences that are frequently associated with genome
rearrangements, including copy number variation (CNV), in many diverse isolates of the …

Microbial cell individuality and the underlying sources of heterogeneity

SV Avery - Nature Reviews Microbiology, 2006 - nature.com
Single cells in genetically homogeneous microbial cultures exhibit marked phenotypic
individuality, a biological phenomenon that is considered to bolster the fitness of …