High-throughput fluorescence microscopy for systems biology

R Pepperkok, J Ellenberg - Nature reviews Molecular cell biology, 2006 - nature.com
In this post-genomic era, we need to define gene function on a genome-wide scale for
model organisms and humans. The fundamental unit of biological processes is the cell …

Increasing the content of high-content screening: an overview

S Singh, AE Carpenter… - Journal of biomolecular …, 2014 - journals.sagepub.com
Target-based high-throughput screening (HTS) has recently been critiqued for its relatively
poor yield compared to phenotypic screening approaches. One type of phenotypic …

A human protein atlas for normal and cancer tissues based on antibody proteomics

M Uhlén, E Björling, C Agaton, CAK Szigyarto… - Molecular & cellular …, 2005 - ASBMB
Antibody-based proteomics provides a powerful approach for the functional study of the
human proteome involving the systematic generation of protein-specific affinity reagents. We …

Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells

C Stadler, E Rexhepaj, VR Singan, RF Murphy… - Nature …, 2013 - nature.com
Imaging techniques such as immunofluorescence (IF) and the expression of fluorescent
protein (FP) fusions are widely used to investigate the subcellular distribution of proteins …

Automated subcellular location determination and high-throughput microscopy

E Glory, RF Murphy - Developmental cell, 2007 - cell.com
Dramatic advances in methods for protein tagging and the development of fully automated
microscopes enable collection of unprecedented volumes of image data on the subcellular …

Reverse transfection on cell arrays for high content screening microscopy

H Erfle, B Neumann, U Liebel, P Rogers, M Held… - Nature protocols, 2007 - nature.com
Here, we describe a robust protocol for the reverse transfection of cells on small interfering
(siRNA) arrays, which, in combination with multi-channel immunofluorescence or time-lapse …

Subcellular fractionation methods and strategies for proteomics

YH Lee, HT Tan, MCM Chung - Proteomics, 2010 - Wiley Online Library
Developments in subcellular fractionation strategies have provided the means to profile and
analyze the protein composition of organelles and cellular structures by proteomics. Here …

The potential of high‐content high‐throughput microscopy in drug discovery

V Starkuviene, R Pepperkok - British journal of pharmacology, 2007 - Wiley Online Library
Fluorescence microscopy is a powerful method to study protein function in its natural habitat,
the living cell. With the availability of the green fluorescent protein and its spectral variants …

miR-378a-3p modulates tamoxifen sensitivity in breast cancer MCF-7 cells through targeting GOLT1A

K Ikeda, K Horie-Inoue, T Ueno, T Suzuki, W Sato… - Scientific reports, 2015 - nature.com
Breast cancer is a hormone-dependent cancer and usually treated with endocrine therapy
using aromatase inhibitors or anti-estrogens such as tamoxifen. A majority of breast cancer …

VMP1 establishes ER-microdomains that regulate membrane contact sites and autophagy

LC Tábara, R Escalante - PloS one, 2016 - journals.plos.org
The endoplasmic reticulum (ER) regulates organelle dynamics through the formation of
membrane contact sites (MCS). Here we describe that VMP1, a multispanning ER-resident …