Cross-linking mass spectrometry (XL-MS): An emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2017 - pmc.ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

Quantitative affinity purification mass spectrometry: a versatile technology to study protein–protein interactions

K Meyer, M Selbach - Frontiers in genetics, 2015 - frontiersin.org
While the genomic revolution has dramatically accelerated the discovery of disease-
associated genes, the functional characterization of the corresponding proteins lags behind …

A new in vivo cross-linking mass spectrometry platform to define protein–protein interactions in living cells

RM Kaake, X Wang, A Burke, C Yu, W Kandur… - Molecular & Cellular …, 2014 - ASBMB
Protein–protein interactions (PPIs) are fundamental to the structure and function of protein
complexes. Resolving the physical contacts between proteins as they occur in cells is critical …

Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing

S Liu, H Wang, X Li, F Zhang, JKJ Lee, Z Li, C Yu… - Science, 2023 - science.org
In Trypanosoma brucei, the editosome, composed of RNA-editing substrate-binding
complex (RESC) and RNA-editing catalytic complex (RECC), orchestrates guide RNA …

Molecular details underlying dynamic structures and regulation of the human 26S proteasome

X Wang, P Cimermancic, C Yu, A Schweitzer… - Molecular & Cellular …, 2017 - ASBMB
The 26S proteasome is the macromolecular machine responsible for ATP/ubiquitin
dependent degradation. As aberration in proteasomal degradation has been implicated in …

Fungal COP9 signalosome assembly requires connection of two trimeric intermediates for integration of intrinsic deneddylase

F Bakti, H Stupperich, K Schmitt… - Proceedings of the …, 2023 - National Acad Sciences
The conserved eight-subunit COP9 signalosome (CSN) is required for multicellular fungal
development. The CSN deneddylase cooperates with the Cand1 exchange factor to control …

RNA binding and core complexes constitute the U-insertion/deletion editosome

I Aphasizheva, L Zhang, X Wang… - … and cellular biology, 2014 - Taylor & Francis
Enzymes embedded into the RNA editing core complex (RECC) catalyze the U-
insertion/deletion editing cascade to generate open reading frames in trypanosomal …

A pipeline for determining protein–protein interactions and proximities in the cellular milieu

RI Subbotin, BT Chait - Molecular & Cellular Proteomics, 2014 - ASBMB
It remains extraordinarily challenging to elucidate endogenous protein-protein interactions
and proximities within the cellular milieu. The dynamic nature and the large range of …

Discovery, structure, and function of filamentous 3-methylcrotonyl-CoA carboxylase

JJ Hu, JKJ Lee, YT Liu, C Yu, L Huang, I Aphasizheva… - Structure, 2023 - cell.com
methylcrotonyl-CoA carboxylase (MCC) is a biotin-dependent mitochondrial enzyme
necessary for leucine catabolism in most organisms. While the crystal structure of …

Ubiquitin-like (UBX)-domain-containing protein, UBXN2A, promotes cell death by interfering with the p53-Mortalin interactions in colon cancer cells

S Sane, A Abdullah, DA Boudreau, RK Autenried… - Cell death & …, 2014 - nature.com
Abstract Mortalin (mot-2) induces inactivation of the tumor suppressor p53's transcriptional
and apoptotic functions by cytoplasmic sequestration of p53 in select cancers. The mot-2 …